Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01811 ATGGCTCTCGAAGCTCTTCAATCACCCACCGCACACACTCCCTTCGAGGAACCCAATCTCAGTTGCCTAGAAGCACCCTGGGCCAAGCGAAAGCGTTCAAAGCGTTCCCGCATGGACCCACCCCACCCTTCCTGCACCGAGGAAGAGTACCTCGCTCTCTGCCTCGTCATGCTCGCTCGCGGCGGCAACGCCGCCGCCGTCTCCGCCGTCAAACCTGCTCTCGCCGACGACAACTCCGCGCCCAAACTCAGCTACAAATGCTCCGTATGCAACAAGGCCTTCTCCTCTTACCAAGCACTCGGCGGACACAAGGCCAGCCACCGGAAGTTCGCTGCCGCCTCCGGCGCCGCCGAAGATCACTCGACCTCCTCCGCGGTGACGACGAGCTCGGCGTCGAACGGCGGAGGAAGGAGCCACGAGTGCTCGATTTGCCACAAGACGTTCCCGACGGGACAGGCCTTGGGAGGACACAAACGTTGTCACTACGAAGGCGGTGGTGGTAACAGCGCCGTAACCGCCTCGGAAGGTGTGGGGTCCACTCACACAGGGAGCCACCGCGATTTCGATCTTAACCTCCCGGCTTTTCCGGACTTCTCCACTAGGTTCTTCGGAGATGACGAGGTTTCCAGTCCTCTACCGTCCAAGAAGCCTCGTCTCAATTTGACTATACCAAAGATCGAAATCCCTCAATACTAA 696 0.5963 MALEALQSPTAHTPFEEPNLSCLEAPWAKRKRSKRSRMDPPHPSCTEEEYLALCLVMLARGGNAAAVSAVKPALADDNSAPKLSYKCSVCNKAFSSYQALGGHKASHRKFAAASGAAEDHSTSSAVTTSSASNGGGRSHECSICHKTFPTGQALGGHKRCHYEGGGGNSAVTASEGVGSTHTGSHRDFDLNLPAFPDFSTRFFGDDEVSSPLPSKKPRLNLTIPKIEIPQY 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01811 231 PANTHER ZINC FINGER PROTEIN ZAT10 1 222 - -
Cca03g01811 231 ProSitePatterns Zinc finger C2H2 type domain signature. 141 161 IPR013087 -
Cca03g01811 231 Pfam C2H2-type zinc finger 139 162 - -
Cca03g01811 231 Pfam C2H2-type zinc finger 85 109 - -
Cca03g01811 231 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Cca03g01811 231 SUPERFAMILY beta-beta-alpha zinc fingers 85 161 IPR036236 -
Cca03g01811 231 MobiDBLite consensus disorder prediction 114 137 - -
Cca03g01811 231 MobiDBLite consensus disorder prediction 117 137 - -
Cca03g01811 231 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 222 IPR044653 GO:0003700
Cca03g01811 231 ProSiteProfiles Zinc finger C2H2 type domain profile. 139 161 IPR013087 -
Cca03g01811 231 SMART c2h2final6 139 161 IPR013087 -
Cca03g01811 231 SMART c2h2final6 85 107 IPR013087 -
Cca03g01811 231 Gene3D Classic Zinc Finger 83 161 - -
Cca03g01811 231 MobiDBLite consensus disorder prediction 26 45 - -
Cca03g01811 231 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 107 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01811 Cca-Chr3 37332843 37334409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01811 1 228 C2H2 Transcription Factor Family AT1G27730 53.469 1.06e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca03g01811 zf-C2H2_6 3.4e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01811 03 37332843 37334409 Cca03g01811 03 37332843 37334409 ECH
Cca05g00103 05 2462148 2463095 Cca03g01811 03 37332843 37334409 PCT