Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01800 ATGTTGTGCGCTTGTTCCGGGGACCAATTCAAATTCGAAGACCCGCCGCAGTCGCCGGAGTCCCTCGCCGCCAGGGATTTCCTCGCCGGTGGCCTCTCTTCCAGAAACGAGGAATGGGATCCTAAATTCGATGAAACTCAAGTACAAGAAGCTGAATCCACTCTCAAAGAAGCTCTTTCCTTAAACTATGAGGAGGCTAGGGCTTTGTTGGGCAGGCTTGAATTCCAGAGAGGGAACTATGAAGCTGCACTTCAAGTGTTTCAAGGTATAGACATCAAGGGTTTAACCCCGAGAATGGTCAAGGCTATTGCTGAAAGAACAAAGCAAAGGAAACCGCGTTCCAAGGCAGATATCGTGGTTTTGAATGTGATGTCATTGCATTCGGTTAGCCTGCTTCTTGAGGCAATTTTACTCAAAGCAAGATCATTGGAGGAACTTGGGCAATGCATTGTGGCTGCAAAAGAGTGCAGAATAATTCTAGATACAGTTGAATCTGCCCTTCCTGATGGAATGCCTGAGGGTATTGGTGAAGATTGTAAGTTGCAAGAGATGTTTCATAAGGCATTGGAGTTGCTTACAAGCCTTTGGATCAAGGCAGGGTTTCTGGATGAAGCTGTCATTGCATATCGTCGTGCTCTGGTAAAGCCATGGAATTTGGAGCCACGTAGGTTGGCTATTGTACAAAAAGATTTAGCTACAATACTGCTATATGGTGGTGTTGAAGTAAGCCTACCCTCTCAGTTGCAGGTGTGCGGTAAGACAACACCCAAGAGTAGTGTTGAAGAAGCAATACTTTTGCTTTTAATACTCATGAGCAAGATGACAATTCGGGAAATAGACTGGGATGCTGAAATAATGGATCATCTTGCTTTTGCACTTTCAGTCACTGGGATGTTTGAGTTATTGGCAGATCATGTAGAGCAGATCCTTCCAGGTATCTATAGTCGAGTTGAGAAGTGGTACTTTCTTGCTCTGTGTTATAGTGCTGCAGGACATAATGAGGTAGCATTGAGCCTTTTAAGAAAGGCTTGTGGCAGCTCTGAGGCAAAGCATAGATCCCATCTTCCTTCATTTTTGTTTGGAGCAAAACTCTGTTCCCAAGATCCTCGCCATGCTCATGAAGGCATTAACTTTTCACGTGAAGTTATTGATCTAGCTAAGCACCAAAATAAGCATTTTTTGGGTCAAGGCCACAAATTTCTTGGCATCTGCTATGGGGCTGCTGCTATAATTTCTGTACTGGATTCTGAGAGAAGTAGATTTCAAAGAGAGTCTTTGGACTCTCTAAACTGTGCTGCTGAAAATGGAAATGATGACCTGGAAGTGATATTCAGCCTTGGACTAGAAAATGCAATTCAAAGGAATCTGGATGCAGCTTACAACAACATAATGATGCACTCATATATGACTGGTGGCAGTACAAGAGGTTGGCAGCTGTTAGCACTCATAGTATCTGCACAGCAGCGATTTAAGGATGCTGAAACTATAGTTGATTTTGCTTTAGATGAGGCTGCGGGGATAGATCAACTTGAACTTCTAAGATTGAAAGCAGTACTTCAAATTGCTCAGCAGCAACCCAAGCAAGCAGTAGAGACATATAGGATCTTGCTAACACTAATTCAAGCAAAAAAAGAGCTTTGGCTTCAAGATTGCAACAACATCGATCAGCAACAAGCATTCAAACATGAGGCATTAACAGAAAGGAAGTTGGAAATGGAATCTTGGCAGGATTTGGCGACCATTTATACGGATGTTGGTTCCTTGCTTGATGCAAAAGCTTGTGTGGACAAGGCACAGTTGATAGAATTTTTTTCTCCAAAAAGTTGGCATATTACAGGGATGTTACTTGAAGCTCAATCATTATACAAAGAAGCATTGGTTTCCTTTTCAATATCATTGTCAATAGAACCAGATCACATTCCCAGTATCATTTCAACTGCTGAATTGTTGATGAAATTTGGTATGCAATCACTTTCAATTGCAAAGAATTTTTTAATGAATGCTTTGAGATTAGAACCTACAAACCATGATGCTTGGTTCAACCTTGGATTGGTTTCAAAAAAGGAAGGTTCGTTACAGCAAGCCGCAGAGTTCTTTCAAGCTGCTTATGAACTGAAGCTTTCTGCTCCAGTGCAAAAATTTAAGTAA 2148 0.4195 MLCACSGDQFKFEDPPQSPESLAARDFLAGGLSSRNEEWDPKFDETQVQEAESTLKEALSLNYEEARALLGRLEFQRGNYEAALQVFQGIDIKGLTPRMVKAIAERTKQRKPRSKADIVVLNVMSLHSVSLLLEAILLKARSLEELGQCIVAAKECRIILDTVESALPDGMPEGIGEDCKLQEMFHKALELLTSLWIKAGFLDEAVIAYRRALVKPWNLEPRRLAIVQKDLATILLYGGVEVSLPSQLQVCGKTTPKSSVEEAILLLLILMSKMTIREIDWDAEIMDHLAFALSVTGMFELLADHVEQILPGIYSRVEKWYFLALCYSAAGHNEVALSLLRKACGSSEAKHRSHLPSFLFGAKLCSQDPRHAHEGINFSREVIDLAKHQNKHFLGQGHKFLGICYGAAAIISVLDSERSRFQRESLDSLNCAAENGNDDLEVIFSLGLENAIQRNLDAAYNNIMMHSYMTGGSTRGWQLLALIVSAQQRFKDAETIVDFALDEAAGIDQLELLRLKAVLQIAQQQPKQAVETYRILLTLIQAKKELWLQDCNNIDQQQAFKHEALTERKLEMESWQDLATIYTDVGSLLDAKACVDKAQLIEFFSPKSWHITGMLLEAQSLYKEALVSFSISLSIEPDHIPSIISTAELLMKFGMQSLSIAKNFLMNALRLEPTNHDAWFNLGLVSKKEGSLQQAAEFFQAAYELKLSAPVQKFK 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01800 715 PANTHER PROTEIN NPGR1 1 715 - -
Cca03g01800 715 SUPERFAMILY TPR-like 46 342 IPR011990 GO:0005515
Cca03g01800 715 SMART tpr_5 474 507 IPR019734 GO:0005515
Cca03g01800 715 SMART tpr_5 317 350 IPR019734 GO:0005515
Cca03g01800 715 SMART tpr_5 510 543 IPR019734 GO:0005515
Cca03g01800 715 SMART tpr_5 676 709 IPR019734 GO:0005515
Cca03g01800 715 SMART tpr_5 606 639 IPR019734 GO:0005515
Cca03g01800 715 ProSiteProfiles TPR repeat profile. 606 639 IPR019734 GO:0005515
Cca03g01800 715 ProSiteProfiles TPR repeat profile. 676 709 IPR019734 GO:0005515
Cca03g01800 715 Pfam Tetratricopeptide repeat 47 89 - -
Cca03g01800 715 Pfam Tetratricopeptide repeat 677 706 IPR019734 GO:0005515
Cca03g01800 715 Gene3D Tetratricopeptide repeat domain 418 710 IPR011990 GO:0005515
Cca03g01800 715 Gene3D Tetratricopeptide repeat domain 17 355 IPR011990 GO:0005515
Cca03g01800 715 SUPERFAMILY TPR-like 564 706 IPR011990 GO:0005515
Cca03g01800 715 PANTHER PROTEIN NPG1 1 715 IPR043376 -
Cca03g01800 715 SUPERFAMILY TPR-like 424 599 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01800 Cca-Chr3 37205286 37208633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01800 1 714 Calmodulin-binding Proteins AT1G27460 58.971 0.0 846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01800 03 37205286 37208633 Cca03g01800 03 37205286 37208633 ECH
Cca05g00093 05 2056218 2059258 Cca03g01800 03 37205286 37208633 PCT