Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01136 ATGGCTAATCGGAAGCACGTTCTAGTTCTTCACCTCACTCTCTTCCTCTCGTTACTCCTCCACGCGGCCTGCAAATCCACCATCGAGCCATGTTCGAACTCGGACTCATGCAACGCGCTTCTCGGCTACACGCTCTACACCGACCTCAAAGTCTCGGAGGTAGCGTCGCTCTTCCAAATCGACCccatcgcgcttctcaccgccaacgccatcgacatctccTACCCCGACGTCGAGCACCACATCCTCCCCTCGCGCCTCTTCCTCAAAATCCCCATCACCTGCTCCTGCGTCGACGGCATTCGGAAATCCGTCTCCACTCACTACAAGACGCGCCCCTCCGACACCCTCGCCTCCATCGCCGACGCCGTCTACGGCGGCCTCGTCTCCTCCGACCAGCTTCGGGAGGCTAATTCCATCGACGACCCTTCCATCCTTGACGTCGGACAGAACCTCGTTGTGCCTCTTCCTTGTACCTGCTTCAACGGTTCTGATAACTCTCTCCCCGCGATTTACCTCTCTTATGTGGTTCGCCCCGTTGATACGCTGCCTGCCATTGCTGCTAGGTATTTCACCACTCTCACGGATTTGATGAATGTGAATGCCATGGGAAGTACTGCTGTTAACGACGGTGATATCCTCGCTGTTCCAATACCCGCTTGTGCTTCGAATTTCCCGAAATCGGCCTCTGATTTTGGCTTGCTTGTGCCTAATGGAAGCTATGCCATTACCGCGGGTCATTGTGTGCAGTGTAGCTGTGGACCGAGAAACCTTAATTTGTACTGTATGCCGGCTTCTCTTGCTGTTTCTTGCTCCAGCATGCAATGTAGAGGCAGTAATCTTATGCTTGGGAATGTTACCGTGCAGCAGACTGGTGGGGGTTGCAATGTTACTTCTTGCAATTATAATGGCATTGTTAATGGCTCCATAGTAACAACGTTGTCCCCTTCTCTTCAGCCTCGATGTCCAGGTCATTTCTTTGGTTGGTTGGTTTTCATTCTGGATGATTTATTTCCGGGGATGTCAGCTGAATCAGTTCAATTAGGCGGGCATATTCAGTACTCTTCCTAA 1071 0.5014 MANRKHVLVLHLTLFLSLLLHAACKSTIEPCSNSDSCNALLGYTLYTDLKVSEVASLFQIDPIALLTANAIDISYPDVEHHILPSRLFLKIPITCSCVDGIRKSVSTHYKTRPSDTLASIADAVYGGLVSSDQLREANSIDDPSILDVGQNLVVPLPCTCFNGSDNSLPAIYLSYVVRPVDTLPAIAARYFTTLTDLMNVNAMGSTAVNDGDILAVPIPACASNFPKSASDFGLLVPNGSYAITAGHCVQCSCGPRNLNLYCMPASLAVSCSSMQCRGSNLMLGNVTVQQTGGGCNVTSCNYNGIVNGSIVTTLSPSLQPRCPGHFFGWLVFILDDLFPGMSAESVQLGGHIQYSS 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01136 356 SUPERFAMILY LysM domain 107 156 IPR036779 -
Cca03g01136 356 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 1 324 - -
Cca03g01136 356 SUPERFAMILY LysM domain 173 218 IPR036779 -
Cca03g01136 356 ProSiteProfiles LysM domain profile. 107 154 IPR018392 -
Cca03g01136 356 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 3 1 324 - -
Cca03g01136 356 SMART LysM_2 108 155 IPR018392 -
Cca03g01136 356 SMART LysM_2 174 217 IPR018392 -
Cca03g01136 356 CDD LysM 174 201 IPR018392 -
Cca03g01136 356 CDD LysM 107 154 IPR018392 -
Cca03g01136 356 Gene3D LysM domain 100 161 IPR036779 -
Cca03g01136 356 ProSiteProfiles LysM domain profile. 173 216 IPR018392 -
Cca03g01136 356 Pfam LysM domain 109 155 IPR018392 -
Cca03g01136 356 Pfam LysM domain 175 214 IPR018392 -
Cca03g01136 356 Gene3D LysM domain 163 228 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01136 Cca-Chr3 27487063 27488625 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01136 4 324 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 74.923 1.06e-179 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01136 - - gmx:100808966 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01136 03 27487063 27488625 Cca03g01136 03 27487063 27488625 ECH