Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01014 ATGTTCCCACAAACACACCAGAGTTTTAACATCAGCCGAGCCGGCCTTCACCCAATGTTGCAACATCACCACCACCACCACTCAATGGaacaacaacaacagcaacaacaacGTTCGAGGTGGAAACCAAGCGTCGAGGTGGCACCCAATTGCCCTCGCTGCGCTTCCACTAACACCAAATTCTGCTACTACAACAACTACAGCTTGTCGCAGCCCAGGTACTTCTGCAAAGGCTGCAGACGCTACTGGACCAAAGGCGGCTCTCTCCGCAACGTCCCCGTCGGCGGTGGCTGCCGCAAAAACCGCCGCTCACGCCACCACCAAAGCCACCGCCTTTCCGCCAATGACTCTGCCTCCGACGACAGAGAGTCGTCATCATTAGGCGATGCCCATGAAAATAGCAACAACAATCACGGGTCACGTGACATAGACATGGCCCTTGTGTTTGCCAAATTCTTGAACCCAAAACCAACCCAGGATAACAACAACAATGCCTCATCCTCCACTTCCAACAATTACCTAACACCGGAAAGTGTAGAAACCGAGAACGATGCAGTGGTGGATCAGAATAAGCCCATTTTATCAGATCCTGCTATCTCTGAGAATTTTGGAGGAGAGGAATTGAGTTGCTTGAGTGGGATTGATGAGTTGGAGATGGAGAGGTTTTTGGGTGTGTGTGGTGATGAAGATGGTCTTTGGTCTGATGCTACAATCTCCTCTTGGCAGTCACATGCAAAGGAAATTCAATTCCAGGAGTTGGAGTTGGAATATTCCATGGATGATGCTCAATTATTACCCTTCGCATCTACAATGAGTGACACTTGGAGTTCCTTTGATCTTTCAACCATGCAACTCTTCTCATCAACTCCTTGA 873 0.48 MFPQTHQSFNISRAGLHPMLQHHHHHHSMEQQQQQQQRSRWKPSVEVAPNCPRCASTNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRSRHHQSHRLSANDSASDDRESSSLGDAHENSNNNHGSRDIDMALVFAKFLNPKPTQDNNNNASSSTSNNYLTPESVETENDAVVDQNKPILSDPAISENFGGEELSCLSGIDELEMERFLGVCGDEDGLWSDATISSWQSHAKEIQFQELELEYSMDDAQLLPFASTMSDTWSSFDLSTMQLFSSTP 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01014 290 ProSitePatterns Zinc finger Dof-type signature. 51 87 IPR003851 GO:0003677|GO:0006355
Cca03g01014 290 Pfam Dof domain, zinc finger 49 103 IPR003851 GO:0003677|GO:0006355
Cca03g01014 290 MobiDBLite consensus disorder prediction 155 184 - -
Cca03g01014 290 ProSiteProfiles Zinc finger Dof-type profile. 49 103 IPR003851 GO:0003677|GO:0006355
Cca03g01014 290 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 36 281 IPR045174 GO:0003700|GO:0006355
Cca03g01014 290 MobiDBLite consensus disorder prediction 20 44 - -
Cca03g01014 290 MobiDBLite consensus disorder prediction 154 184 - -
Cca03g01014 290 MobiDBLite consensus disorder prediction 110 128 - -
Cca03g01014 290 MobiDBLite consensus disorder prediction 90 140 - -
Cca03g01014 290 PANTHER DOF ZINC FINGER PROTEIN DOF1.2 36 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01014 Cca-Chr3 24907894 24909244 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01014 29 238 C2C2-Dof Transcription Factor Family AT3G52440 41.176 3.21e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca03g01014 zf-Dof 8.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01014 - - gmx:100806008 315.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01014 03 24907894 24909244 Cca03g01014 03 24907894 24909244 ECH