Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00945 ATGGACACAGCTCAGTGGGCACAGGGGATTGGAGTGGTTAAGCCACCTATGGAAGGTTCAAAGGCTCCTCCCATGTTGGAGAGAAGGGCAAGGCCTCAGAAGGATCAAGCTTTGAACTGTCCAAGGTGCAATTCCACCAACACCAAATTCTGCTACTACAATAACTATAGCCTCTCTCAGCCTAGGTACTTTTGCAAGACATGTAGAAGGTATTGGACTGAGGGAGGATCACTCAGAAACGTTCCTGTGGGTGGTGGCTCTAGAAAGAACAAGAGATcaacatcaaccccatcagcacccccaccaccaccgtcagcaccaacaAAGAAGCTTCATGATCTTACAGCACTAAATTTCCCTCAATCTGCTTCTCAGGACCCTAAGATCCACCAAGGGCAAGACCTAAACTTGGCATATCCACCAGTTGAGGACTATGCCACTGTTTCCAAGTTCATTGAGGTTCCTTACAGCACTGAATTGGACAAGGGTCTTCAAAATCAAAACCCCACCTCAGCAACATCATCATCATCTCAGTTGTCTGCCATGGAGCTTCTCAAAACTGGGATTGTTGCTTCCTCTAGGGGCTTGAACTCCTTCATGCCAATGTATAATAATTCAACTGGGTTTCCTTTGCAAGATTTTAAGCCACCACACGGCCTTAACTTCAGCCTTGAGGGGTTTGAAAATGGTTATGGGAGCCTTCAAGGAATTCAAGAGGGTCCTACTGGTGGTGCAAGGATCTTGTTTCCTGTGGAGGATTTGAAGCAGCAGGTTCCAAACACTAATGAGTTTGATCAGCACAATAGAAGTCAAGGGGATTCAACTGGGTATTGGAATGGCATGTTAGGTGGAGGATCATGGTAG 864 0.4352 MDTAQWAQGIGVVKPPMEGSKAPPMLERRARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSTSTPSAPPPPPSAPTKKLHDLTALNFPQSASQDPKIHQGQDLNLAYPPVEDYATVSKFIEVPYSTELDKGLQNQNPTSATSSSSQLSAMELLKTGIVASSRGLNSFMPMYNNSTGFPLQDFKPPHGLNFSLEGFENGYGSLQGIQEGPTGGARILFPVEDLKQQVPNTNEFDQHNRSQGDSTGYWNGMLGGGSW 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00945 287 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 1 284 - -
Cca03g00945 287 ProSitePatterns Zinc finger Dof-type signature. 40 76 IPR003851 GO:0003677|GO:0006355
Cca03g00945 287 MobiDBLite consensus disorder prediction 262 287 - -
Cca03g00945 287 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 284 IPR045174 GO:0003700|GO:0006355
Cca03g00945 287 MobiDBLite consensus disorder prediction 79 111 - -
Cca03g00945 287 MobiDBLite consensus disorder prediction 1 22 - -
Cca03g00945 287 MobiDBLite consensus disorder prediction 262 277 - -
Cca03g00945 287 ProSiteProfiles Zinc finger Dof-type profile. 38 92 IPR003851 GO:0003677|GO:0006355
Cca03g00945 287 Pfam Dof domain, zinc finger 35 92 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00945 Cca-Chr3 23352360 23354443 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00945 25 287 C2C2-Dof Transcription Factor Family AT3G61850 44.561 1.16e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca03g00945 zf-Dof 1.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00945 - - gmx:778114 483.411