Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00686 ATGGGGAGAGGAAGGGTGCAGTTGAAGAGGATCGAGAACAAGATCAATAGGCAAGTTACGTTCTCAAAGAGAAGGTCTGGTTTGCTCAAGAAAGCACACGAGATCTCTGTGCTTTGTGATGCTGAAGTGGCTCTCATAGTCTTCTCCACCAAAGGAAAACTCTTTGAGTACTCTAGTGATCCCTGTATGGAACGAATTCTTGAACGGTATGAGAGGTATTCATATGCGGAGAGGCAACTTGTTGCAAGTGAACCACAAACTGAAAATTGGACTCTAGAACATGCAAAGCTCAAAGCAAGGTTGGAAGTCCTACAGAAAAATCAAAGAAATTTTATGGGACAAGATTTGGATGGCCTAAGCATCAAAGAGCTTCAGAATTTGGAGCATCAGCTTGATAGTGCTCTCAAACACATTAGATCACGGAAGAACCAACTCATGTATGAATCTATTTCAGAGCTTCATAAAAAGGTGAGTCTTGTCTTCATCTTTTTATTAAGTATAGGTTGCAAAATAGCCATATTGCTCAACGAGTCAATAGAAGGTGTAGACAATTTTGTTCTCTTTCTCCAGAATTGGAACAACTCATGTTTATGA 594 0.4007 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSSDPCMERILERYERYSYAERQLVASEPQTENWTLEHAKLKARLEVLQKNQRNFMGQDLDGLSIKELQNLEHQLDSALKHIRSRKNQLMYESISELHKKVSLVFIFLLSIGCKIAILLNESIEGVDNFVLFLQNWNNSCL 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00686 197 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca03g00686 197 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Cca03g00686 197 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cca03g00686 197 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Cca03g00686 197 Pfam K-box region 84 158 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca03g00686 197 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Cca03g00686 197 ProSiteProfiles K-box domain profile. 87 197 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca03g00686 197 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cca03g00686 197 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca03g00686 197 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca03g00686 197 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cca03g00686 197 Coils Coil 87 107 - -
Cca03g00686 197 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 156 - -
Cca03g00686 197 Coils Coil 124 144 - -
Cca03g00686 197 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cca03g00686 197 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00686 Cca-Chr3 12567539 12571832 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00686 1 156 MADS-box Gene Family AT1G26310 69.811 3.01e-79 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Cca03g00686 K-box 4.8e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00686 03 12567539 12571832 Cca11g02044 11 46007708 46015437 ECH
Cca07g02283 07 51349164 51359559 Cca03g00686 03 12567539 12571832 ECH
Cca09g00342 09 8045052 8060440 Cca03g00686 03 12567539 12571832 ECH
Cca03g00686 03 12567539 12571832 Cca03g00686 03 12567539 12571832 ECH