Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00590 ATGCAGGAAACTAAGGACCCCGCGATTAAGCTCTTCGGCCAGAAGATTCCCTTTCCCGGCGGCGCCGACGCTCCGCTCATTGCCGCTGCTGAATCTCCCTCGCCGCCGCTGATGGATGTCGACGGAGAAGATGACTTTGACTTTGCTGACTCCGAGGCTGAAGAAGACAAACATCAGGATCCTGGCGCTGAAACAATTAGTGAGAAAACAAAAGAAGTTGATCCTCCTCCAAATGGTGGTGAAGACTCTAACAAGAGCCCAGAGGGCATTCAGAAGCCAAACACACCTTCCATAGACGAAGAAAGTCAATCTGCAAAGTCAAAAAGCGAGAACAAGTCAGAGAACGACCCAaacaacaacaacaacaacaaaacaCTGAAAAAACCAGACAAGATCCTCCCGTGTCCACGGTGCAACAGCATGGACACCAAGTTCTGCTACTACAACAACTACAACGTGAACCAGCCACGCTACTTCTGCAAAGCGTGCCAAAGGTACTGGACCGCGGGTGGCACCATGAGAAACGTCCCAGTGGGTGCAGGGAGAAGAAAGAACAAGAACTCAGCCTCTCACTACCGCCACATCACCATCTCAGAGGCCCTTCAAGCTGCTAGAATCGAATCCCCAAATGTTCCAACTTTGAAAACTAATGGAAGAGTTCTCAGCTTCGGCTTGGACCCTCCCATTTGTGATTCCATGGCATCAGTGCTCAACCTCGCGGAGAACAACACAAGAAACGGCTTTCACAATCACGCCGTGGAGGATCAGAGAAACAAGGAAGATGATTGCTCAAGTGCTTCCTCCATCACGGTTTCTAATGAAGAGAGTGGGAAAAGCACGTCGCAGGAATCTATAATGGTGCAAAACATAAACAGCAACGGTTTCATTCCTCATGTTCCGTGTGTTTCAACTGTTCCTTGGCCTTACCCTTGGAACAATGGTGCACCTGCTTTGTGCCCTCCAGGGTTTCCCATGTCATTCTACCCTGCTGCGGCATTTTGGAACATTCCATGGTTTCCCTCACATTCTCCAACGCTTGGGAAGCACTCGAGGGAGGATGACGTGGCCAAAGAGGACCCTTTGAGGCAGAGAAACGGGTCTTCTGTTTTGGTGCCAAAAACATTGAGGATTGATGACCCCAGTGAGGCTGCAAAGAGTTCTATATGGGCAACGTTGGGGATCAAGAACGAGTGTGTGAGTGGGGGAGGCATGTTCAAAGGATTCCAATCCAAGAAGGACGAGAAAAACCACGTTGTTGAAACCTCTCCTGTCTTGAGGGCCAACCCTGCAGCCTTGTCTAGATCCCTAAATTTTCACGAAAACTCTTGA 1329 0.4898 MQETKDPAIKLFGQKIPFPGGADAPLIAAAESPSPPLMDVDGEDDFDFADSEAEEDKHQDPGAETISEKTKEVDPPPNGGEDSNKSPEGIQKPNTPSIDEESQSAKSKSENKSENDPNNNNNNKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSASHYRHITISEALQAARIESPNVPTLKTNGRVLSFGLDPPICDSMASVLNLAENNTRNGFHNHAVEDQRNKEDDCSSASSITVSNEESGKSTSQESIMVQNINSNGFIPHVPCVSTVPWPYPWNNGAPALCPPGFPMSFYPAAAFWNIPWFPSHSPTLGKHSREDDVAKEDPLRQRNGSSVLVPKTLRIDDPSEAAKSSIWATLGIKNECVSGGGMFKGFQSKKDEKNHVVETSPVLRANPAALSRSLNFHENS 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00590 442 PANTHER CYCLIC DOF FACTOR 2 1 441 IPR045174 GO:0003700|GO:0006355
Cca03g00590 442 ProSitePatterns Zinc finger Dof-type signature. 135 171 IPR003851 GO:0003677|GO:0006355
Cca03g00590 442 PANTHER CYCLIC DOF FACTOR 1 1 441 - -
Cca03g00590 442 MobiDBLite consensus disorder prediction 251 282 - -
Cca03g00590 442 MobiDBLite consensus disorder prediction 52 78 - -
Cca03g00590 442 Pfam Dof domain, zinc finger 130 187 IPR003851 GO:0003677|GO:0006355
Cca03g00590 442 MobiDBLite consensus disorder prediction 1 133 - -
Cca03g00590 442 MobiDBLite consensus disorder prediction 84 102 - -
Cca03g00590 442 ProSiteProfiles Zinc finger Dof-type profile. 133 187 IPR003851 GO:0003677|GO:0006355
Cca03g00590 442 MobiDBLite consensus disorder prediction 346 367 - -
Cca03g00590 442 MobiDBLite consensus disorder prediction 263 282 - -
Cca03g00590 442 MobiDBLite consensus disorder prediction 346 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00590 Cca-Chr3 10242919 10246292 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00590 1 440 C2C2-Dof Transcription Factor Family AT3G47500 48.247 5.38e-122 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca03g00590 zf-Dof 1.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00590 - - gsj:114409713 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00590 03 10242919 10246292 Cca11g01967 11 45063844 45066553 ECH
Cca07g02169 07 49860971 49864544 Cca03g00590 03 10242919 10246292 ECH
Cca06g00639 06 18072197 18076158 Cca03g00590 03 10242919 10246292 ECH
Cca03g00590 03 10242919 10246292 Cca03g00590 03 10242919 10246292 ECH