Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00273 ATGGAGGGAAGATCACATTCTATGGAAAGAGAAGATGAATATGATTTGTTCCCAATATATTCGGAAAGGTCACAACAAGACATGTCGGCTATGGTCTCTGCCCTCACACAAGTCATTGGTGGCTCCAACAATGACCCTCTTCAAGTGCATGGAGACCTTTTAACTTCTTCACACAACACCTCAACCCAGAATAATGAACAATCCCAACTACCCCAACAAGATCAAGGGAGTGTAAGAAGAAGACACTATAGAGGAGTGAGGCAGCGTCCATGGGGAAAATGGGCTGCAGAAATTCGCGATCCTAAGAAAGCAGCGAGGGTATGGCTTGGAACATTCGAAACTGCTGAAGCTGCAGCTCTTGCCTACGATGAAGCTGCTCTCAGATTCAAAGGAAGCAAAGCTAAGCTCAATTTTCCCGAAAGGGTTCAAGGCACAGGCGAATTTGGTTACCTCACTAATCAACATGTGTCATCTAGCAGTAACAGTGAGCAAGCTTCTAACCCTGTTGCTCCACACTTTACGCAAGAAACATATTCATCAAATCACTTTcaatatccacaacaacaacaacaacaacTTATGGGGAGTGGCAGCAGCAACAACTTCAATGATCATGATATGGTTCATTACTATGGTGGAGACATGTTTGTTTCTTCTCAACCAGCTGCATCTTCGTCTTCTTCTACTGGATTTATATCTCAGCAGCAACAAGACTTTCTGAGATTTTCTATGCAGTTTGGAGGTTCTTCTTCTGCTTCTGACCATGCTAGGAATTGGAGGGATGGTAGACATTGA 795 0.4226 MEGRSHSMEREDEYDLFPIYSERSQQDMSAMVSALTQVIGGSNNDPLQVHGDLLTSSHNTSTQNNEQSQLPQQDQGSVRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEAAALAYDEAALRFKGSKAKLNFPERVQGTGEFGYLTNQHVSSSSNSEQASNPVAPHFTQETYSSNHFQYPQQQQQQLMGSGSSNNFNDHDMVHYYGGDMFVSSQPAASSSSSTGFISQQQQDFLRFSMQFGGSSSASDHARNWRDGRH 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00273 264 ProSiteProfiles AP2/ERF domain profile. 82 139 IPR001471 GO:0003700|GO:0006355
Cca03g00273 264 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 19 248 - -
Cca03g00273 264 Pfam AP2 domain 82 131 IPR001471 GO:0003700|GO:0006355
Cca03g00273 264 CDD AP2 82 140 IPR001471 GO:0003700|GO:0006355
Cca03g00273 264 SMART rav1_2 82 145 IPR001471 GO:0003700|GO:0006355
Cca03g00273 264 MobiDBLite consensus disorder prediction 40 86 - -
Cca03g00273 264 Gene3D AP2/ERF domain 81 141 IPR036955 GO:0003700|GO:0006355
Cca03g00273 264 SUPERFAMILY DNA-binding domain 82 140 IPR016177 GO:0003677
Cca03g00273 264 MobiDBLite consensus disorder prediction 40 76 - -
Cca03g00273 264 PANTHER DNA-BINDING DOMAIN 19 248 IPR044808 GO:0003700|GO:0009873
Cca03g00273 264 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Cca03g00273 264 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00273 Cca-Chr3 3997562 4000065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00273 15 154 AP2-EREBP Transcription Factor Family AT5G61890 66.667 3.94e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca03g00273 AP2 3.1e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00273 03 3997562 4000065 Cca09g02350 09 48796705 48800011 ECH
Cca07g00740 07 11436554 11439395 Cca03g00273 03 3997562 4000065 ECH
Cca07g02357 07 52158938 52162730 Cca03g00273 03 3997562 4000065 ECH
Cca03g00273 03 3997562 4000065 Cca03g00273 03 3997562 4000065 ECH
Cca09g02350 09 48796705 48800011 Cca03g00273 03 3997562 4000065 PCT