Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02703 ATGAGTCAGAGGGGTTTGATATATAGCTTTGTTGCCAAAGGAACTGTTGTTTTAGCAGAGCACACGCAATATACGGGGAATTTCAGCACCATTGCTGTTCAGTGCCTGCAGAAGCTGCCTTCAAATAGCAGCAAATACACGTATTCCTGTGATGGTCACACCTTTAACTTCCTCCTAGACAATGGATTTGTTTTTCTTGTTGTTGCTGATGAATCAGTTGGGAGGAGTGTTCCTTTTGTGTTTCTTGAACGGGTGAAGGATGACTTTATGAAGCGCTACGGTGCTAGCATTAATAATGACAGTGCCCATCCACTtgctgatgatgatgacgacgatgatTTATTTGCGGACCGATTTAGCATAGCATATCATCTTGATAGAGAATTTGGACCAGCGCTCAAGGAGCATATGCAGTATTGCATGAATCATCCAGAAGAAATGAGTAAACTATCAAAATTGAAGGCTCAAATAACCGAGGTCAAGGGTATTATGATGGACAATATTGAGAAGGTTTTGGATCGTGGAGAGAAGATTGAACTGCTGGTAGACAAAACAGAAAACTTGCAGTTTCAGGCTGACAGCTTTCAGAGGCAGGGCAGGCAGCTGAGAAGAAAGATGTGGCTGCAGAATCTCCAAATGAAGTTGATGTTGGGAGGAGGAATCGTTACCTTAATTATAATTCTGTGGGTTATTGCTTGTGGGGGTTTCAAATGCTGA 717 0.4086 MSQRGLIYSFVAKGTVVLAEHTQYTGNFSTIAVQCLQKLPSNSSKYTYSCDGHTFNFLLDNGFVFLVVADESVGRSVPFVFLERVKDDFMKRYGASINNDSAHPLADDDDDDDLFADRFSIAYHLDREFGPALKEHMQYCMNHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGEKIELLVDKTENLQFQADSFQRQGRQLRRKMWLQNLQMKLMLGGGIVTLIIILWVIACGGFKC 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02703 238 Pfam Regulated-SNARE-like domain 32 100 IPR010908 -
Cca02g02703 238 ProSiteProfiles Longin domain profile. 6 133 IPR010908 -
Cca02g02703 238 SMART Longin_2 31 113 IPR010908 -
Cca02g02703 238 SUPERFAMILY SNARE fusion complex 144 210 - -
Cca02g02703 238 PANTHER SNARE PROTEINS 1 238 - -
Cca02g02703 238 SUPERFAMILY SNARE-like 6 139 IPR011012 -
Cca02g02703 238 Gene3D - 147 233 - -
Cca02g02703 238 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 149 209 IPR042855 -
Cca02g02703 238 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN 727 1 238 - -
Cca02g02703 238 Pfam Synaptobrevin 148 234 IPR042855 -
Cca02g02703 238 CDD R-SNARE 149 207 - -
Cca02g02703 238 CDD Longin 7 140 IPR010908 -
Cca02g02703 238 PRINTS Synaptobrevin signature 154 173 IPR001388 GO:0016021|GO:0016192
Cca02g02703 238 PRINTS Synaptobrevin signature 174 193 IPR001388 GO:0016021|GO:0016192
Cca02g02703 238 PRINTS Synaptobrevin signature 210 229 IPR001388 GO:0016021|GO:0016192
Cca02g02703 238 ProSitePatterns Synaptobrevin signature. 167 186 IPR001388 GO:0016021|GO:0016192
Cca02g02703 238 Gene3D Longin domain 1 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02703 Cca-Chr2 48448353 48453140 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02703 1 238 Miscellaneous Gene Families AT3G54300 87.395 1.72e-157 434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02703 02 48448353 48453140 Cca02g02703 02 48448353 48453140 ECH