Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02683 ATGGATTCTCCTTCTTTCTCTTCCTCCTCCTCCGAGTTCGCTTCCATAGCCACCGCCAATCAGAGTGTGGCCCGGAGCGGCGGAGAAGGCGCGGCGGCGGAGCAATCACGGCGGTGGCACGACGTATTCTGGTTAGGAATATTCTTGATCCATTTGATTGGGCTGGGGTTCCTTCTGGGGGTTCTTGGCCTTAATAGGTTTGAGAAAGAGAATAGGCTTAACATTGACAAGTACACGTCCCGGTTTTCTGAGAACGAATCCGGGTTGACTGAGACTTACTGGCCACTGTATGCTGCTGCTGGTGGGGTTGGGACTGTTCTTGGATGGATTTGGTTGGTGTTGTTGGGTTCCCAGGCCACCCAAATGATGAAGGTTTCTGTTCACATACTCACCACTTACCTTGCTGTCATCAGTGTTTTGTGTTTTTGGGCTGGCCAGATTTTCTGGGGGGTTGCTTTTGCTATTGGAGCTTCTATCCAGTTCCTTTATGTCATATCAGTCATAGACAGACTTCCATTTACGATGTTGGTTCTGCAAAAAGCTGTGAAGATGGTTTGGAATCTTCCTGAGGTTAGGAGAGTGGCATATGCATTTATGTTTGTCGTGCTTTTATGGATGGCCTTATGGTCATTTGGAGCAGCGGGTGTTGTGGCTTCGAGCATGGGTGATGGTGGCCGCTGGTGGCTTCTTGTGGTTCTCTCTGTGAGCTTATTCTGGACAGGTGCAGTACTATGTAATACTGTACATGTTATAGTGTCTGGGATGGTGTTTCTTGTTCTTTTTCATGGTGGTAGAGATGCAGCTTCTATTCCAGCTAACTCCTTAATGAAATCTCTAAAGTATGCTTTAACAACATCTTTTGGCAGCATTTGTTATGGTTCATTATTTACTGCAGCTATTAGGACACTGCGGTGGGAGATACGGGGATTTCGGTCAAAGATCGGCAATAATGAGTGTTTACTTTGCTTGGTTGATTTTCTTTTCCATCTTGTGGAGACTCTTGTTCGTTTCTTTAACAAGTATGCCTATGTTCAGATTGCTGTTCATGGTAAAAGCTTTAACCGCTCAGCTAGAGATGCATGGGAGTTATTCCAGTCAACTGGGGTTGAAGCACTTGTGGCCTATGATTGTTCTGGTGCTGTCCTTCTAATGGGCACTGTTTTTGGTGGACTGATAACTGGAACTTGCTCTGGTGTTTGGGCATGGGTTAAATGGGGGGACAGAGTTATTATGATTGGGTCTACGTCCATGCTGATGGGGATGGTACTGGTTGGATTGGCAATGGTTGTGGTGGAAAGTGCTGTTACATCGATATATATCTGCTATGCAGAAGACCCCTTATTGATTCAGAGATGGGATGCTGAATTTTTCAACCAGATGTCTGAGACACTTCATCAGCGACTTCAATATAGGAGTGCTCGAGCAAGGGAAGTTTTAGCCCACAATCGACTTCATGACCTGAATCAGACAGAGCTTTGA 1479 0.4591 MDSPSFSSSSSEFASIATANQSVARSGGEGAAAEQSRRWHDVFWLGIFLIHLIGLGFLLGVLGLNRFEKENRLNIDKYTSRFSENESGLTETYWPLYAAAGGVGTVLGWIWLVLLGSQATQMMKVSVHILTTYLAVISVLCFWAGQIFWGVAFAIGASIQFLYVISVIDRLPFTMLVLQKAVKMVWNLPEVRRVAYAFMFVVLLWMALWSFGAAGVVASSMGDGGRWWLLVVLSVSLFWTGAVLCNTVHVIVSGMVFLVLFHGGRDAASIPANSLMKSLKYALTTSFGSICYGSLFTAAIRTLRWEIRGFRSKIGNNECLLCLVDFLFHLVETLVRFFNKYAYVQIAVHGKSFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTVFGGLITGTCSGVWAWVKWGDRVIMIGSTSMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIQRWDAEFFNQMSETLHQRLQYRSARAREVLAHNRLHDLNQTEL 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02683 492 Pfam Plasma-membrane choline transporter 152 446 IPR007603 GO:0022857|GO:0055085
Cca02g02683 492 PANTHER PLASMA-MEMBRANE CHOLINE TRANSPORTER FAMILY PROTEIN 15 485 - -
Cca02g02683 492 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 15 485 IPR007603 GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02683 Cca-Chr2 48197095 48202593 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02683 02 48197095 48202593 Cca02g02683 02 48197095 48202593 ECH