Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02682 ATGCAAAGCTTCAACATAACCGAATCAGAATCAACCTCACCCCTCTATTCCCATTCTTCCTTCTTTCACCGGGGAAATGACACGAGCCGAAATCCCACGCGTTTCGCGGATCTTCAACATTGTTTTCGACAACACGATGCTGTTGATTTAAGCTCAAGTTCTGTGTTTGGTGCAAAGTCGAGCAATGTGGCTGTTGTTGCAAGCAACTTGCAGCGTGGGACATTCAACACGAACCTTGGTTGTGCGGAATTTGCTTCAGCAGTTGCAGGGTGCATTGAGGCAGAGAAGCAACCCATGTTCCAGAGAGGAGGCACTAACGCCACCATGCCACTGGGGGACCAGCACGTTGAGAATTGGGCAGATGATAGCCAACACACTGAAGATACTTGCACTGATATTGATAATGATGATAAGAACCAATGTTACTCTACTGTGTCTTGGGGCAATGGAGTTGGGGATGGGGCACTAGTAGTTGTGGACTCGCAGGATCAATGTAAGACTAAGGCTAAAGCTGAAGACCAGAAGACTATACGTAGGCTAGCTCAGAATCGGGAGGCTGCAAGGAAGAGTCGGTTGAGGAAAAAGGCATATGTGCAACAATTGGAGAACAGTCGAGTTAGGCTTGCTCAATTAGAGCAAGAACTTCAACGTGCACGTCAACAGGGCGTATCTATTGCAACTGGAATCACGGGGGATCGTGGTCATTCAGTTGTTGGAAATGGTGCTTTAGCATTTGATATGGACTATTCCCGTTGGGTTGATGAGCATCAACGGTTGATCAATGACATAAGATCAGCTATAAACTCTCAAATGGGTGATAATGAACTGCATCTTCTTGTTGATGGAGTCATGGCACATTATGATGAATTATTTAGGATAAAGAGCATAGGAGCAAAGGCTGATGTATTTCACATACTGTCTGGGATGTGGAAGACACCTGCAGAAAGATGCTTCATATGGCTGGGTGGATTTCGTTCATCTGAACTTCTCAAGATAGTTAGAAACCAGCTTGAGCCGTTAACCGAACAGCAGTTGATGGGCATATATAATCTGCAGCAGTCTTCCCAGCAGGCTGAGGATGCATTATCACAAGGCATGGAAGCGTTGCAGCAGTCTCTTTCAGAGACACTCTCCTCATCCTCCCTAGGGCCCTCAGGTTCTGGAAATGTTGCCGAGTACATGGGCCAAATGGCTATTGCATTGGGCAAGCTTGCCACCCTTGAGAGTTTCCTTCATCAGGCTGACCTCTTGAGGCAACAAACACTGCAACAGATGCGTCGAATTTTGACCACGTTCCAAGCTGCTCGTGCTCTACTTGTCATAAATGATTACGTTTCACGTCTTAGAGCTCTTAATTCATTATGGTTAGCGTGCCCTAGAGAGTACTAG 1389 0.4636 MQSFNITESESTSPLYSHSSFFHRGNDTSRNPTRFADLQHCFRQHDAVDLSSSSVFGAKSSNVAVVASNLQRGTFNTNLGCAEFASAVAGCIEAEKQPMFQRGGTNATMPLGDQHVENWADDSQHTEDTCTDIDNDDKNQCYSTVSWGNGVGDGALVVVDSQDQCKTKAKAEDQKTIRRLAQNREAARKSRLRKKAYVQQLENSRVRLAQLEQELQRARQQGVSIATGITGDRGHSVVGNGALAFDMDYSRWVDEHQRLINDIRSAINSQMGDNELHLLVDGVMAHYDELFRIKSIGAKADVFHILSGMWKTPAERCFIWLGGFRSSELLKIVRNQLEPLTEQQLMGIYNLQQSSQQAEDALSQGMEALQQSLSETLSSSSLGPSGSGNVAEYMGQMAIALGKLATLESFLHQADLLRQQTLQQMRRILTTFQAARALLVINDYVSRLRALNSLWLACPREY 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02682 462 CDD bZIP_HBP1b-like 175 227 - -
Cca02g02682 462 Gene3D - 174 225 - -
Cca02g02682 462 ProSiteProfiles DOG1 domain profile. 242 458 IPR025422 GO:0006351|GO:0043565
Cca02g02682 462 SMART brlzneu 171 242 IPR004827 GO:0003700|GO:0006355
Cca02g02682 462 Pfam Seed dormancy control 260 334 IPR025422 GO:0006351|GO:0043565
Cca02g02682 462 PANTHER TRANSCRIPTION FACTOR PERIANTHIA 42 461 - -
Cca02g02682 462 Pfam bZIP transcription factor 174 214 IPR004827 GO:0003700|GO:0006355
Cca02g02682 462 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 178 193 IPR004827 GO:0003700|GO:0006355
Cca02g02682 462 PANTHER TRANSCRIPTION FACTOR TGA9 42 461 - -
Cca02g02682 462 SUPERFAMILY Leucine zipper domain 175 218 IPR046347 GO:0003700|GO:0006355
Cca02g02682 462 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 173 217 IPR004827 GO:0003700|GO:0006355
Cca02g02682 462 Coils Coil 194 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02682 Cca-Chr2 48185446 48190139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02682 12 461 bZIP Transcription Factor Family AT1G68640 55.054 1.45e-159 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Cca02g02682 DOG1 5.1e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02682 02 48185446 48190139 Cca02g02682 02 48185446 48190139 ECH