Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02679 ATGGCTGAAGAACCACTATATCCAATAGCAGTTCTTATAGATGAGTTGAAAAATGATGACATCCAGCTGCGGTTGAACTCGATTCGCAGGCTATCAACAATTGCGCGTGCACTTGGGGAGGAGCGAACCCGTCGAGAATTAATTCCATTTTTGAGTGAAAATAATGATGACGATGATGAGGTGCTTCTTGCAATGGCAGAAGAGTTGGGAGTGTTCATTCCTTATGTCGGGGGAGTGGAACATGCTAGTGTGTTGCTGCCACCGCTGGAAACACTTTGCACTGTTGAGGAAACCTGTGTGAGAGATAAAGCTGTGGAGTCACTTTGTAGAATTGGATCTCAAATGAAGGAGAGTGATTTGGTTGAATATTTCATCCCATTGGTGAAGAGATTGGCAGCAGGTGAATGGTTTACTGCCCGAGTCTCTGCATGTGGACTATTTCATATTGCATACCCTAGTGCACCTGAAACTTCAAAGACAGAGTTGAGATCAATATATAGTCAGTTATGTCAGGATGACATGCCTATGGTTAGAAGGTCAGCTGCATCAAATCTTGGGAAATTTGCTGCAACTGTTGAATATGCTCATTTGAAGGCTGATGTGATGTCAATTTTTGAGGATCTAACTCAAGATGATCAAGATTCTGTCAGATTGTTGGCTGTGGAGGGCTGTGCTGCTCTTGGCAAGCTGTTGGAGCCACAAGATTGTGTTGCTCATATACTTCCAGTTATTGTTAACTTCTCCCAGgataagtcttggcgtgtacgttacatggttgcaaatcaattgtatgagctttgtgaagctgtaggcccagaacctaccagaacggaattggtacctgcttatgtgcgattacttcgagataacgaggctgaagtacgcatagcagctgctggaaaagtgaccaagttttgccggattttaaatcctgatcttgcaattcagcatattcttccttgtgTGAAGGAATTGTCATCAGATTCTTCACAGCATGTCCGCTCTGCTTTGGCTTCAGTAATAATGGGAATGGCTCCAGTGTTAGGAAAGGAAGCAACAATTGAGCAGCTTCTTCCTATTTTCCTTTCCCTTTTGAAGGATGAATTTCCTGATGTGCGTCTAAACATTATCAGCAAGCTTGATCAAGTGAATCAGGTTATAGGAATCGATTTGTTATCTCAGTCTTTGTTACCAGCCATTGTTGAGCTTGCTGAGGATAGGCATTGGAGGGTCCGGCTTGCAATTATAGAATATATACCCTTATTGGCAAGTCAATTGGGGGTTGGGTTTTTTGATGACAAGCTTGGTGCTCTTTGCATGCAGTGGTTACAGGATAAGGTTCATTCTATTCGTGAAGCAGCTGCTAACAATTTGAAACGACTTGCTGAAGAATTTGGACCTGAGTGGGCTATGCAGCACATAATTCCTCAGGTTTTGGAGATGAGCAGCAATTCACACTATTTGTATCGGATGACTATTCTTCGTGCTATCTCTCTACTTGCTCCCGTAATGGGCTCTGAAATCACTTGTTCGAACTTGTTACCAGTTGTTGTTGGTGCATCAAAAGACAGAGTGCCCAACATAAAGTTCAATGTGGCAAAGGTATTGGAGTCCATCTTCCCCATCGTTGATCAGTCTGTGGTGGAGAAGACTATTCGTCCATGTTTGGTTGAGCTGAGCGAGGATCCTGATGTTGATGTGCGATTTTTTTCCAACCAAGCACTCCAGGCAATTGATCATGTCATGATGTCTAGCTAG 1758 0.3783 MAEEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRRELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHASVLLPPLETLCTVEETCVRDKAVESLCRIGSQMKESDLVEYFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPETSKTELRSIYSQLCQDDMPMVRRSAASNLGKFAATVEYAHLKADVMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPDLAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKEATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVHSIREAAANNLKRLAEEFGPEWAMQHIIPQVLEMSSNSHYLYRMTILRAISLLAPVMGSEITCSNLLPVVVGASKDRVPNIKFNVAKVLESIFPIVDQSVVEKTIRPCLVELSEDPDVDVRFFSNQALQAIDHVMMSS 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02679 585 ProSiteProfiles HEAT repeat profile. 279 317 IPR021133 -
Cca02g02679 585 ProSiteProfiles HEAT repeat profile. 474 512 IPR021133 -
Cca02g02679 585 ProSiteProfiles HEAT repeat profile. 8 46 IPR021133 -
Cca02g02679 585 PANTHER PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT A, PUTATIVE-RELATED 3 585 - -
Cca02g02679 585 ProSiteProfiles HEAT repeat profile. 85 123 IPR021133 -
Cca02g02679 585 ProSiteProfiles HEAT repeat profile. 240 278 IPR021133 -
Cca02g02679 585 ProSiteProfiles HEAT repeat profile. 162 200 IPR021133 -
Cca02g02679 585 ProSiteProfiles HEAT repeat profile. 396 434 IPR021133 -
Cca02g02679 585 ProSiteProfiles HEAT repeat profile. 357 395 IPR021133 -
Cca02g02679 585 SUPERFAMILY ARM repeat 5 578 IPR016024 -
Cca02g02679 585 Pfam HEAT repeats 359 459 - -
Cca02g02679 585 ProSiteProfiles HEAT repeat profile. 552 585 IPR021133 -
Cca02g02679 585 ProSiteProfiles HEAT repeat profile. 318 356 IPR021133 -
Cca02g02679 585 ProSiteProfiles HEAT repeat profile. 513 551 IPR021133 -
Cca02g02679 585 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT 3 585 - -
Cca02g02679 585 Pfam HEAT repeat 240 268 IPR000357 GO:0005515
Cca02g02679 585 ProSiteProfiles HEAT repeat profile. 435 473 IPR021133 -
Cca02g02679 585 Gene3D - 2 581 IPR011989 -
Cca02g02679 585 ProSiteProfiles HEAT repeat profile. 201 239 IPR021133 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02679 Cca-Chr2 48168953 48175966 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02679 02 48168953 48175966 Cca02g02679 02 48168953 48175966 ECH