Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02676 ATGGCCACCGATGCCCGTGACTCGCGTCGCAAGCATCACCGATCATCCTCTCCGGAGGACGTTGACAGATCCTCCAAGCGCCACAAGCACCGCCACCGCCACCGCCACGGGACCAAAAAGCGCGACGAAGAGATCGAATTCGACGACAGAACAATTGCTGCGCTTCCTTCTCCAATTCCGCGTACACATCTCCGTGACGACGATGTGGAGGAGGGAGAGATCCTTGAAGACGAGGCTCTCGATGGCGAGGTTGGAAAAAAGGAGACGGAATCTGATGTCGAGCCTGGTGAAATCAAGGTGACAGGAGATCGAGATGTTCGATCTGATAATCAAAATTCGGGACACCTCACTAGAAATTCAGAATCTAGAAATGAGGAAATTAGAGGTGATAAATTTAGTAGTCCTGCAGTGAATGCAGAAGACGGTGTCTCTCCTAATCAGTCAAGTGCTAGGACTCGAGATAGAAAGCATGCTCAAGCTCAGACAGATGATGTTGGGAATGGCTATTTGGATCCTAAATCTTCCAAAGGGGATAAGTGGCAGAATGGGGAACTTGGACATTCTAAAGGAAATGAAAAACTAAAAGGTGTCTTTGATGACGAAGCACTGGAGGCTAATGCAAGGAAAGCATATTACCATAGGAGTTCGTCCTCTGAAAGTGGAGGAGAAAAATATCGAATCTCTGGAAGTTCTCATTCTCATGGTAGGCATAGAAGTCGATCAAGATCAACAGGTCATACTAGAGACAGGTCTCGTTCTCGTAGTACCATAGAAGAATATGCTCATTCCAAGAGAAGGCGCTCTGGGGACCAAGGGTCCATTTATTATACTGGCAGACATGATACTGACTATGATAATGATGATGAAAGAGTAAGGGGTCATGGAAGGGAGCATGGTCATGCCAGTGTGGTAGATAATAGAAGGGACTACGGTACCAGATATCAAAATCGGGATGCCTgggatagggataggagtagggacagagatgtggatagagaCTTGCACAGAGAAAAGAAACAAGAGGAAACAAGCAGGGGTAGGGAGATTGAGTGGGAACACAAAAGGGGAAAAGAACGTGAAAGGAGCCGCGAGAGATATAGAAGAGATGTAGAAAAAGATAGGAGCAAAGAAAGGGAGGAGGATAGGGACAGGAGACGAGAAAAGGAAAGAGATAGAAGTTGGGAGACAATGTTTGAGAGGGATAGGAGAAGGGAAAAGGAAAGAGATAGAAGTAGGGACAGAACAAGAGGTGGCAAGAGAGATAGAGACCTGGAGAATGAAAGGGATGACAAGAATCGGGAAAGAGATAACATTAAGGAGAGGGAAAGGCGAGATGATAGATATAGGCACAAAGACAGAGACACTGCAAATGGTAAAGATAGGCATCTGCGTCATGAGGATGGTAATGACAATGGAGATAGATATAGAAAACATTCAAGACATGAAGAAAATGAATACCATTGGGAAAGAAAAAGAAATTCTGATAATCTTGTAATGGCTTATACTGCAGAAGAGGGTGATAGCAAACTAACAAGCAGTGAGGTTGGACCAAATGAATTAGAGGAGGATACATTGCAATTACCTGAGAAAGAAGAGGAAGATCTCAACAGGATCAaagaagagagtagaagaagaagggaagcaataatggagaaatacaagaagcagcatcagcaagtagaacaagCTGTTGGAAATGAAGGAAATGGCAAGGATGCAGACATTCCTATTAACATCTCAGAAGCACGCGATAGTAAGAATGATGGTGCTGATTCTGCTGAACAATCATTTGCTGTTGGGAAATCTCCTGAAAATGTGAATGCTTCTTCTAAGAAGACATCTCTTGCCGGGGGCCTGGGAGAGGGTAGTCCAAAGGGTGAGAGGTCAGATGATATGTTTTGTGATGATATATTTGGTGAGACACCAACAGGTGTTCGGAAATCAGGAAAAGGGGATGGTTTACTGATTGAGAGGGTTGGCCTACATGACAATTGGGATGATGCAGAGGGTTATTACAGCTATCGTATAGGTGAAATACTTGATGGCAGATATGAAGTCACTGCTGCACATGGGAGGGGTGTCTTTTCAACAGTTGTTCGGGCAAAGAATCTAAAAATGGGAAATGGTGAGCCAGAAGAAGTAGCAATAAAAATTATTCGTAATAATGACACCATGTACAAGGCTGGGATGGATGAATTGGTTATATTAAAGAAATTAGTAGGTGCAGATCCAGATGATAAGCGTCATTGTGTTCGTTTCCTTTCAAGTTTTAGATACCGGAATCATCTTTGTTTAGTTTTTGAATCTCTTAATATGAATCTGCGTGAGGTTTTAAAGAAGTTTGGTCGCAATATTGGCCTTAGGCTAACAGCAGTGAGAGCATATGCAAAACAACTTTTTATTGCACTCAAGCATCTCCGGAACTGTGGTGTTCTTCACTGTGATATAAAGCCAGATAATATGTTGGTAAACGAAGCTAAAAATGTGTTGAAGCTATGTGACTTTGGTAATGCTATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGCCGTTTTTATCGTGCCCCAGAAATAATACTTGGCTTGACATATGATCATCCATTGGATATTTGGTCTGTAGGTTGTTGTTTGTATGAGTTGTATGTTGGGAAGGTTCTTTTCCCAGGGTTTACAAACAATGACATGCTACGGCTTCACATGGAACTGAAGGGCCCTTTTCCGAAAAAGATGCTACGCAAGGGAGCATTTACTGAACAGCATTTTGATCAAGACCTGAATTTTCTTGCTACTGAAGAAGATCCTGTAACAAAAAAGACCATAAAGCGGCTGATTCTCAACATTAAGCCAAAAGATATTGGGACATTCATCACTGGCTCTGCTGGGGAGGATCCAAAAATGTTAGCAAACTTTAAGGATCTTCTGGAAAAAGTTTTTGTCTTGGATCCAGACAAGAGGCTGACAGTTTCACAAGCTCTGAACCACCCATTCATCACTGGCAAGTGA 3009 0.4128 MATDARDSRRKHHRSSSPEDVDRSSKRHKHRHRHRHGTKKRDEEIEFDDRTIAALPSPIPRTHLRDDDVEEGEILEDEALDGEVGKKETESDVEPGEIKVTGDRDVRSDNQNSGHLTRNSESRNEEIRGDKFSSPAVNAEDGVSPNQSSARTRDRKHAQAQTDDVGNGYLDPKSSKGDKWQNGELGHSKGNEKLKGVFDDEALEANARKAYYHRSSSSESGGEKYRISGSSHSHGRHRSRSRSTGHTRDRSRSRSTIEEYAHSKRRRSGDQGSIYYTGRHDTDYDNDDERVRGHGREHGHASVVDNRRDYGTRYQNRDAWDRDRSRDRDVDRDLHREKKQEETSRGREIEWEHKRGKERERSRERYRRDVEKDRSKEREEDRDRRREKERDRSWETMFERDRRREKERDRSRDRTRGGKRDRDLENERDDKNRERDNIKERERRDDRYRHKDRDTANGKDRHLRHEDGNDNGDRYRKHSRHEENEYHWERKRNSDNLVMAYTAEEGDSKLTSSEVGPNELEEDTLQLPEKEEEDLNRIKEESRRRREAIMEKYKKQHQQVEQAVGNEGNGKDADIPINISEARDSKNDGADSAEQSFAVGKSPENVNASSKKTSLAGGLGEGSPKGERSDDMFCDDIFGETPTGVRKSGKGDGLLIERVGLHDNWDDAEGYYSYRIGEILDGRYEVTAAHGRGVFSTVVRAKNLKMGNGEPEEVAIKIIRNNDTMYKAGMDELVILKKLVGADPDDKRHCVRFLSSFRYRNHLCLVFESLNMNLREVLKKFGRNIGLRLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLTYDHPLDIWSVGCCLYELYVGKVLFPGFTNNDMLRLHMELKGPFPKKMLRKGAFTEQHFDQDLNFLATEEDPVTKKTIKRLILNIKPKDIGTFITGSAGEDPKMLANFKDLLEKVFVLDPDKRLTVSQALNHPFITGK 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02676 1002 MobiDBLite consensus disorder prediction 530 558 - -
Cca02g02676 1002 PANTHER DUAL SPECIFICITY PROTEIN KINASE 352 1002 - -
Cca02g02676 1002 CDD STKc_PRP4 683 999 IPR044092 GO:0004674|GO:0006468|GO:0045292
Cca02g02676 1002 MobiDBLite consensus disorder prediction 280 494 - -
Cca02g02676 1002 Pfam Protein kinase domain 686 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02676 1002 MobiDBLite consensus disorder prediction 231 245 - -
Cca02g02676 1002 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672|GO:0006468
Cca02g02676 1002 Gene3D Transferase(Phosphotransferase) domain 1 744 1000 - -
Cca02g02676 1002 Coils Coil 421 444 - -
Cca02g02676 1002 MobiDBLite consensus disorder prediction 1 25 - -
Cca02g02676 1002 SUPERFAMILY Protein kinase-like (PK-like) 671 1001 IPR011009 -
Cca02g02676 1002 ProSiteProfiles Protein kinase domain profile. 684 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02676 1002 MobiDBLite consensus disorder prediction 211 636 - -
Cca02g02676 1002 MobiDBLite consensus disorder prediction 177 197 - -
Cca02g02676 1002 MobiDBLite consensus disorder prediction 246 269 - -
Cca02g02676 1002 Gene3D Phosphorylase Kinase; domain 1 655 743 - -
Cca02g02676 1002 MobiDBLite consensus disorder prediction 598 616 - -
Cca02g02676 1002 MobiDBLite consensus disorder prediction 1 197 - -
Cca02g02676 1002 SMART serkin_6 684 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02676 1002 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 352 1002 - -
Cca02g02676 1002 MobiDBLite consensus disorder prediction 211 227 - -
Cca02g02676 1002 MobiDBLite consensus disorder prediction 79 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02676 Cca-Chr2 48138465 48149381 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02676 691 1000 MAP Kinase Gene Family AT4G01370 34.169 3.70e-27 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Cca02g02676 Pkinase 3.2e-46 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02676 02 48138465 48149381 Cca02g02676 02 48138465 48149381 ECH