Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02668 ATGCCTGACCCTCGGAAACAACCGGCTTCTAGAGGGAAGCAAAAGCTTCAGCAAGAGTCCAAACCGATGAGAAAACTTCGCATATTTTACAACGATCCAGATGCTACCGACTCATCCGAAGATGAGTCGGAGAGGCTTCAAAACCCGGTAAAGGCAAAAAGAAGAGTGTGTGAGATCTCTCTTCCCCCTCTTCCTCGAATATTCACCACAGCAGAAACGAGTTCCTGTGAGGTGAATAGCAACAAAAATGTTTGTATTGAAGGGGAGCCCCAAAGTAAGAAGAGGGCTTTGTTCCAAACCCAGTCAACTAAGAAGAGGCCTTCTGGGAAACCTAAAGGTGTTAGGCAGAGGAAATGGGGTAAATGGGCTGCTGAGATTCGTGACCCCTTTAAGGGTGGTCGTGTATGGTTAGGCACTTTCGATACTGAAGAAGCGGCTTCCCAAGCCTACGAGGCCAAAAGGTTCGAGTATGAAACTCGGGCAAAGACTGAAGCTTTGGCTAATAATGGACCTTTGGCGACATCTTCTAATAAGAGTAACTCCACCATCTCTTCTGTTGTTGCTGCTGTCTCTGTATCTGAGAAGTTTTCTACTACTTCTACTTCTGAGGACTCGTCCGAGAGTGTGTTGTCACACATATCACCATCCTCCGTACTTGAGTTGGATACCTCGGCTTCTAAATCCTTTGACAAGGATAATGTTGTTTTCACTGAGGAAGCTACTGATTTGGTGGCTGAACTTGCAGGGTTAGAAATACCAGATTTGAGTCTGTTGAACTTGCCACCACCACCTGCTGCTGGTGGTCCATCTGGATCTGAGCCTAACTTTGCACTTGATTTTGATTTGTTATCCTTTGATGATTATGGACAGGGTTTTGATGATCTTGGTGACTTGGAAGATCTTCACATTTTTGGGTTTGATGACAATGAGCCTAGTGAGCTTCCTGATTTTGATTTTGGTGATTTTGGTGCTGATGAGTTTGCTGGTTGGATTGAGGAGCCCCTCAATATACCTTGTGCCTAA 1023 0.4526 MPDPRKQPASRGKQKLQQESKPMRKLRIFYNDPDATDSSEDESERLQNPVKAKRRVCEISLPPLPRIFTTAETSSCEVNSNKNVCIEGEPQSKKRALFQTQSTKKRPSGKPKGVRQRKWGKWAAEIRDPFKGGRVWLGTFDTEEAASQAYEAKRFEYETRAKTEALANNGPLATSSNKSNSTISSVVAAVSVSEKFSTTSTSEDSSESVLSHISPSSVLELDTSASKSFDKDNVVFTEEATDLVAELAGLEIPDLSLLNLPPPPAAGGPSGSEPNFALDFDLLSFDDYGQGFDDLGDLEDLHIFGFDDNEPSELPDFDFGDFGADEFAGWIEEPLNIPCA 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02668 340 CDD AP2 112 152 IPR001471 GO:0003700|GO:0006355
Cca02g02668 340 Gene3D AP2/ERF domain 112 168 IPR036955 GO:0003700|GO:0006355
Cca02g02668 340 SMART rav1_2 110 170 IPR001471 GO:0003700|GO:0006355
Cca02g02668 340 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 14 340 - -
Cca02g02668 340 MobiDBLite consensus disorder prediction 1 51 - -
Cca02g02668 340 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Cca02g02668 340 PRINTS Ethylene responsive element binding protein signature 133 149 IPR001471 GO:0003700|GO:0006355
Cca02g02668 340 MobiDBLite consensus disorder prediction 1 31 - -
Cca02g02668 340 Pfam AP2 domain 110 159 IPR001471 GO:0003700|GO:0006355
Cca02g02668 340 PIRSF PTI6 6 258 IPR017392 GO:0003700
Cca02g02668 340 PIRSF PTI6 276 327 IPR017392 GO:0003700
Cca02g02668 340 SUPERFAMILY DNA-binding domain 111 158 IPR016177 GO:0003677
Cca02g02668 340 MobiDBLite consensus disorder prediction 87 119 - -
Cca02g02668 340 ProSiteProfiles AP2/ERF domain profile. 110 171 IPR001471 GO:0003700|GO:0006355
Cca02g02668 340 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 14 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02668 Cca-Chr2 48036757 48039191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02668 16 339 AP2-EREBP Transcription Factor Family AT1G68550 34.731 2.00e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca02g02668 AP2 4.6e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02668 02 48036757 48039191 Cca02g02668 02 48036757 48039191 ECH