Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02666 ATGCCTCCAATGTTGCCGGATTTCTCCAACTCCGTCAAGCTCAAGTATGTCAAACTTGGCTACCAATACCTAGTGAACCACATTCTCACCCTCACTCTCATACCCATCATGATAGGTGTCTTCATAGAGGTTCTTCGCTTGGGCCCTGACGAGATCCTCAACCTCTGGAACTCTCTCCACTTTGACCTCCTCCAAATCCTATGCTCAGCCTTCCTCATAATCTTCATAGCCACCGTCTACTTCATGTCAAAGCCCCGCACCATCTACCTCGTCGACTACGCCTGCTTCAAGCCACCCGTCACGTGCCGCGTCCCCTTCGCAACCTTCATGGAACACTCCAGGCTCATCCTCAAGAACAACCCCAAGAGCGTCGAGCTCATCCTCAAGAACAACCCCACGAGCGTCGAGTTTCAGATGAGGATTCTCGAACGCTCTGGCCTCGGGGAAGAGACCTGTCTCCCCCCCGCCATTCACTACATCCCTCCCAAACCCACCATGGAAGCCGCCAGGGGAGAGGCTGAGCTCGTCATCTTCTCCGCCATGGATTCCTTGTTCGACAAGACCGGCCTCAAGCCTAAGGACATAGACATTCTTATTGTCAATTGCAGCCTCTTCTCTCCCACTCCTTCTCTCTCTGCTATGGTGATTAACAAGTACAAGCTGCGGAGCAACATCAAGAGCTTTAACCTCTCTGGCATGGGTTGCAGCGCTGGCTTGATATCCATTGACTTGGCACGTGACCTTCTCCAAGTCCACCCTAACTCAAACGCCGTCGTTGTCAGCACCGAGATTATAACTCCCAACTACTACCAAGGAAACGAGAGAGCCATGCTTCTTCCCAATTGTTTGTTCCGAATGGGGGGTGCTGCTATTTTGTTATCCAACCGTAGGTCTGAACGTAGGAGAGCCAAGTATAGGTTGGTCCACGTCGTTCGAACTCACAAAGGAGGCGACGACAAAGCATACCGTTGCGTGTTTGAGGAAGAAGACAAAGAAGGCAAAGTAGGGATTTCGCTTCAGAAGGATCTCATGGCGATTGCAGGTGAGGCTCTCAAGTCCAACATAACTACCATGGGTCCTCTCGTGCTTCCCGCTTCGGAGCAGTTGCTGTTCCTTCTCACTCTTATTGGTAGGAAAATCTTCAACCCCAAATGGAAGCCTTATATTCCTGACTTCAAACAAGCCTTTGAGCACTTCTGCATCCATGCTGGAGGCCGTGCTGTGATTGACGAGTTGCAGAAGAATCTTCAGCTTTCTGCGGAGCATGTTGAGGCCTCGAGGATGACCCTGCACAGGTTTGGGAACACTTCCTCTTCTTCTCTTTGGTATGAGCTCAACTACATTGAGTCCAAGGGGAGGATGAAGAGAGGGGACAGGGTGTGGCAGATAGCGTTTGGGAGTGGCTTTAAATGCAACAGTGCTGTCTGGAAGTGCAACAGAAGCATTAAGACACCGGTTGATGGGCCTTGGACTGATTGCATTGATCGTTACCCCGTTCATATTCCTGAGATCGTTAAGCTCTAG 1524 0.5085 MPPMLPDFSNSVKLKYVKLGYQYLVNHILTLTLIPIMIGVFIEVLRLGPDEILNLWNSLHFDLLQILCSAFLIIFIATVYFMSKPRTIYLVDYACFKPPVTCRVPFATFMEHSRLILKNNPKSVELILKNNPTSVEFQMRILERSGLGEETCLPPAIHYIPPKPTMEAARGEAELVIFSAMDSLFDKTGLKPKDIDILIVNCSLFSPTPSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISIDLARDLLQVHPNSNAVVVSTEIITPNYYQGNERAMLLPNCLFRMGGAAILLSNRRSERRRAKYRLVHVVRTHKGGDDKAYRCVFEEEDKEGKVGISLQKDLMAIAGEALKSNITTMGPLVLPASEQLLFLLTLIGRKIFNPKWKPYIPDFKQAFEHFCIHAGGRAVIDELQKNLQLSAEHVEASRMTLHRFGNTSSSSLWYELNYIESKGRMKRGDRVWQIAFGSGFKCNSAVWKCNRSIKTPVDGPWTDCIDRYPVHIPEIVKL 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02666 507 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 395 477 IPR013747 -
Cca02g02666 507 Pfam FAE1/Type III polyketide synthase-like protein 80 379 IPR013601 GO:0006633|GO:0016020|GO:0016747
Cca02g02666 507 SUPERFAMILY Thiolase-like 74 303 IPR016039 GO:0016746
Cca02g02666 507 Gene3D - 109 477 IPR016039 GO:0016746
Cca02g02666 507 SUPERFAMILY Thiolase-like 284 478 IPR016039 GO:0016746
Cca02g02666 507 CDD CHS_like 73 476 - -
Cca02g02666 507 PANTHER 3-KETOACYL-COA SYNTHASE 126 506 IPR012392 GO:0006633|GO:0016020|GO:0016747
Cca02g02666 507 PANTHER 3-KETOACYL-COA SYNTHASE 4 125 IPR012392 GO:0006633|GO:0016020|GO:0016747
Cca02g02666 507 PANTHER 3-KETOACYL-COA SYNTHASE 4 125 - -
Cca02g02666 507 PIRSF Very_long_ch_3-ktacl-CoA_syn 7 507 IPR012392 GO:0006633|GO:0016020|GO:0016747
Cca02g02666 507 PANTHER 3-KETOACYL-COA SYNTHASE 126 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02666 Cca-Chr2 47973392 47975168 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02666 5 507 Miscellaneous Gene Families AT1G25450 81.909 0.0 884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02666 02 47973392 47975168 Cca02g02666 02 47973392 47975168 ECH