Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02665 ATGAACTTTCCTAACCCAACCAATGAAAAACCAGATAAGGCCTCCCCGGGTGGACCCCAAAGTTCAATCCCTTTCAATGTTCAAGGTCCCAAAAGTGCAAATCCAAACAATCTCTCCCTGTTAAATACACTGCAAAAGCGCCTCTTGTGGGTCACGCAACACTCTTTTCCTCTCCCATTAGCTAAACTTCAACCTAAACCAAAACACAAAGTGTTCAAGTGTGAACCCCTTTTGGTTGGCTTCGAATTTTGTTTTAGTGTAATGAGTAGTTCAGCTAAGAACGCGGCAAACGCGGTGGGTGGTAAAACAGCAAGGGCATGCGACAGCTGCATAACGAAACGGGCTCGTTGGTACTGTGCTGCCGACGACGCTTTCCTATGCCAAGCTTGCGACTCTTCGGTCCACTCCGCCAATCCCTTGGCTCGCAGACACGAACGAGTCCGCTTGAAAACGGCGTCGTTCAAGTCCGGCGACGAACAACAGCCTCCGACGTGGCACACCAAGAAAGCTCGGACGCCGAGGCATGGGAAGCACTCTCCGGTCAGTCGCAATAGCAACATAAACCCCTTCTATCTAGTTCCGGAAGTGGGTTCGGAGGAGGTGAATTCCCAGGACGAGAACGAGGAGCAGCTTCTTTATAGGGTTCCGATATTCGACCCTTTGGTAGCTGAGCTATGTGGGACTAATAGTTCTGCTTCTTCGGCGACGTCAACTGATGAAGGAGGAGGAGGGGGAGCGgctgctgctgctgctgctgctgctgctgctgAGGTTGAAAAGAAAGGGGTTGAGAGCAATGTTTTCTGTCACAACAATGAGATGGAAAACTTGCATGGATTGCTTCCTTCTGATGCAGAACTTGCTGAGTTTGCTGCTGATGTTGAGAGCTTGTTGGGTAGGGGACTTGAAAACGAGTGCGTGGGGATGGAGGTGCTGGGGCTGGTGGATGCGAAAGAGGAGTGTTGGGTGAAGGTAgaagaggaagaggaagaggaagaggaagagCATGGTGCAGTGGAGATGGAGATGGAGATGGTGGGTGGAAGAGATGAATCGTTTGAGTTGAGCTTTGATTATGAAATGTGTgaagaggtgaatgagaaggaagatgaggaggagaaaaggaagaagaagaagaTATCGTTGCAGCTAGATTATGAGGGGGTAATCATCGCTTGGCCTAGTCAGAAGTCTCCTTGGACCACTGCTCACAGGCCTAACTTGGACCCTGATCAGTGCTGGCACGAATGCATGGGAGGTTGTGGAACGGCAGTGGATAATCCTTATGGTGAAATGGGAATGGGAGGGTTTGGAATTCATCCAGTAATAATGGACGGAGGGAGAGAGGCAAGGGTGTCAAGGTACAGAGAGAAGCGCCGCACAAGGTTGTTCTCCAAGAAAATAAGGTACGAGGTTAGGAAATTGAATGCAGAGAAGAGACCCAGAATGAAGGGCAGGTTTGTCAAGAGGGCCTCCTTTGCACCACCCACATTTCCTTTGCTAAATAAATAA 1512 0.459 MNFPNPTNEKPDKASPGGPQSSIPFNVQGPKSANPNNLSLLNTLQKRLLWVTQHSFPLPLAKLQPKPKHKVFKCEPLLVGFEFCFSVMSSSAKNAANAVGGKTARACDSCITKRARWYCAADDAFLCQACDSSVHSANPLARRHERVRLKTASFKSGDEQQPPTWHTKKARTPRHGKHSPVSRNSNINPFYLVPEVGSEEVNSQDENEEQLLYRVPIFDPLVAELCGTNSSASSATSTDEGGGGGAAAAAAAAAAAEVEKKGVESNVFCHNNEMENLHGLLPSDAELAEFAADVESLLGRGLENECVGMEVLGLVDAKEECWVKVEEEEEEEEEEHGAVEMEMEMVGGRDESFELSFDYEMCEEVNEKEDEEEKRKKKKISLQLDYEGVIIAWPSQKSPWTTAHRPNLDPDQCWHECMGGCGTAVDNPYGEMGMGGFGIHPVIMDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAPPTFPLLNK 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02665 503 Pfam B-box zinc finger 104 147 IPR000315 GO:0008270
Cca02g02665 503 ProSiteProfiles Zinc finger B-box type profile. 102 149 IPR000315 GO:0008270
Cca02g02665 503 MobiDBLite consensus disorder prediction 152 184 - -
Cca02g02665 503 Pfam CCT motif 448 490 IPR010402 GO:0005515
Cca02g02665 503 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 91 496 - -
Cca02g02665 503 ProSiteProfiles CCT domain profile. 448 490 IPR010402 GO:0005515
Cca02g02665 503 SMART bboxneu5 102 149 IPR000315 GO:0008270
Cca02g02665 503 CDD Bbox1_BBX-like 106 149 - -
Cca02g02665 503 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 91 496 - -
Cca02g02665 503 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02665 Cca-Chr2 47949113 47951698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02665 93 490 C2C2-CO-like Transcription Factor Family AT1G25440 44.780 3.52e-95 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Cca02g02665 zf-B_box 1.1e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02665 02 47949113 47951698 Cca02g02665 02 47949113 47951698 ECH