Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02664 ATGAAATTGAGTTGCAATGGGTGTCGCATACTTCGCAAAGGTTGCAATGAGAATTGCATCCTTAGGCCTTGCCTTGAGTGGATTAACTCCTCTGAGGCCCAAGCCAATGCCACCCTTTTCCTTGCCAAATTCTATGGTCGTACGGGCTTACTCAACCTCCTCATGGCTGCTCCGCAACACCTTGGCCCAGTTGTGTTCAGGTCATTATTGTATGAGGCATGTGGGAGATTAGTGAATCCTACTTATGGGTCGTTAGGTTTGTTTTGGACCGGTGAGTGGGCCCAATGCGAAGCAGCAGTTGAAGCAGTGCTGAGTGGATCCCAAATCAATGGTGTGGCACCTTCTAATTCACAAACCTTAGGGACACTCGGTGGTGATCACATTCTCCCAACGTGTGACATACGTCATGTGCCGAAAGTTAAAATTGTTGATGATGTGAGAGTTAAAGCTGGGCTTAAAAGAGTTGGGCCAGTTGTTAAGCCCAAACCGCGAGTGAGTACGGTGGACTCGACTTCGTTGCGGCAACCCAATTGTGAGAGTAAGAGAATGAGGGTCATGGAAGCTTCTTTTGTGAGTCGAGACGACTTGAATCGAGTCGGTGAAACGGAGTTAAACTTGGAACTAACTCTTGGCTTTCGTTGCCAATCAACCAGTGCCAATAAAACAAACTAA 672 0.4732 MKLSCNGCRILRKGCNENCILRPCLEWINSSEAQANATLFLAKFYGRTGLLNLLMAAPQHLGPVVFRSLLYEACGRLVNPTYGSLGLFWTGEWAQCEAAVEAVLSGSQINGVAPSNSQTLGTLGGDHILPTCDIRHVPKVKIVDDVRVKAGLKRVGPVVKPKPRVSTVDSTSLRQPNCESKRMRVMEASFVSRDDLNRVGETELNLELTLGFRCQSTSANKTN 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02664 223 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Cca02g02664 223 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Cca02g02664 223 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 222 - -
Cca02g02664 223 PANTHER LOB DOMAIN PROTEIN 1 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02664 Cca-Chr2 47946229 47947174 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02664 1 139 AS2 family AT1G68510 61.538 1.84e-59 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca02g02664 LOB 2.1e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02664 02 47946229 47947174 Cca02g02664 02 47946229 47947174 ECH
Cca02g02664 02 47946229 47947174 Cca08g00224 08 3136749 3138575 ECH
Cca02g02664 02 47946229 47947174 Cca07g02510 07 53918554 53920816 ECH
Cca02g02664 02 47946229 47947174 Cca09g00464 09 11414169 11415713 ECH