Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02658 ATGAGACCAGAAGGAAACCCATTAGATCTTAACAATTTGCCTGATGATTACTCTAGAGATGGCAAACAAGTTCTCGAAGACCATGCCTCTTCACCCGGTTGCAGGAAAAAGAAAAGCGGCGGGAAGGATGGAAAAGACGAGTGTGGGAAGGTCTACGAGTGTAGATTTTGTTCCCTCAAGTTCTGCAAATCTCAGGCTCTCGGGGGACACATGAACCGCCACCGCCAAGAGAGGGAAACGGAGACGCTGAACCAAGCTCGTCAGCTGGTCTTCCGTAGTGATCATAACCTTGCTGCACAAGCTCCTCCTCACTTAGGATGCTGTACACCGGGAGGGTATCATCCACCAGGGGATCCAACAGTGCCTATGAGGTTCCCGAGATACTTCTCAGGTTCATCCTCAACTCACATGGCGCCACCACCGCCACCGCAACCATACCTATACGCTTCACCTTCGAGACCAGTGTCTTTTGGGTCATCGCACTTCCCGCACCAGCATGCAGCGAATGATTACTATGTGGGTCACGTGATGAGTGGGAGCTATGGAGGAGAGAGCACTAGCAGCTACACTTGCATTGGTGCACCGGTGGGGCAAGGAGGAAAAGAGGGAACAGTGCAGGAAGAAGGATTGAGTTGGGGAAGGGGGTATGCAGGAGCACAGCATCGTTTAGATCCTGCTTCAGCGATCAATCGGTTTCAAGATGGTTTCTAA 711 0.5162 MRPEGNPLDLNNLPDDYSRDGKQVLEDHASSPGCRKKKSGGKDGKDECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNQARQLVFRSDHNLAAQAPPHLGCCTPGGYHPPGDPTVPMRFPRYFSGSSSTHMAPPPPPQPYLYASPSRPVSFGSSHFPHQHAANDYYVGHVMSGSYGGESTSSYTCIGAPVGQGGKEGTVQEEGLSWGRGYAGAQHRLDPASAINRFQDGF 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02658 236 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 79 IPR013087 -
Cca02g02658 236 Gene3D Classic Zinc Finger 30 104 - -
Cca02g02658 236 PANTHER ZINC FINGER PROTEIN JAGGED 1 223 IPR031113 GO:0007275
Cca02g02658 236 MobiDBLite consensus disorder prediction 1 46 - -
Cca02g02658 236 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Cca02g02658 236 SUPERFAMILY beta-beta-alpha zinc fingers 44 98 IPR036236 -
Cca02g02658 236 MobiDBLite consensus disorder prediction 15 46 - -
Cca02g02658 236 PANTHER ZINC FINGER PROTEIN JAGGED 1 223 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02658 Cca-Chr2 47882714 47885202 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02658 4 201 C2H2 Transcription Factor Family AT1G13400 45.192 1.23e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca02g02658 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02658 02 47882714 47885202 Cca02g02658 02 47882714 47885202 ECH