Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02650 ATGTCCACAATTGCAAAGAGAGAGTTGAGTTCTAATGAAGAAGAGAGTGAGCTGAGAAGAGGCCCTTGGACTCTTGAAGAAGACAGCTTACTCATTCACTATATTGCTCGTCATGGTGAAGGTCGTTGGAATATGTTAGCCAAAAGTGCAGGATTGAAGAGGACTGGAAAAAGCTGCAGACTCAGATGGCTGAATTATTTGAAACCAGACATCAAGAGAGGAAACCTCACTCCACAGGAGCAACTCTTGATCCTTGAACTCCATTCCAAGTGGGGTAACAGGTGGTCAAAAATTGCTCAGCATCTGCCAGGAAGAACAGACAATGAGATCAAGAACTATTGGAGAACAAGGGTGCAGAAACAGGCACGCCAACTTAACATTGAGTCTGGAAGCAAGAGATTCATTGATGCTGTCAAGTGTTTTTGGATGCCAAGATTGCTCCAAAAGATGGAACAGAACAATTCTCCAAGTCCTCACTCCTCCATGTCAAATATGATGAATTTAGGAAATTCTGGAGAAGCTTCTATGAGTTCAATGTCAAGCACCTTCAATATTCCTTCTATGTCTTCACCATCTCCTCCACAAAAGGAGTTTATAGATGCTGCAAATCATTTTAGTACTATGTCCAACCCCATCAATCCATCCCCAGATTCCTTCCAATTTTCACAGCTACTTGAAAATTCTGAATACCCCAAAAGTTCTCCCAATGTGCTTGAGAACAATGTTTATAGCTATCCAATTCAGGATAATTGCTATGTTGATACCAATAACTATGGAATGGAAGGCCTAAACATGGATCCCCTTTCAGCAATGGAAACTTGTGACTTCCCACAGTTTGATTTTCAGACTGCAGGGAGTGAATGGATGCTAGACAGCATGGGGGATACTACTTTATGGAACATGGATGCTATGTGA 915 0.4175 MSTIAKRELSSNEEESELRRGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSKRFIDAVKCFWMPRLLQKMEQNNSPSPHSSMSNMMNLGNSGEASMSSMSSTFNIPSMSSPSPPQKEFIDAANHFSTMSNPINPSPDSFQFSQLLENSEYPKSSPNVLENNVYSYPIQDNCYVDTNNYGMEGLNMDPLSAMETCDFPQFDFQTAGSEWMLDSMGDTTLWNMDAM 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02650 304 SMART sant 19 69 IPR001005 -
Cca02g02650 304 SMART sant 72 120 IPR001005 -
Cca02g02650 304 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 5 302 IPR044676 GO:0003700|GO:0006355|GO:0043565
Cca02g02650 304 MobiDBLite consensus disorder prediction 1 20 - -
Cca02g02650 304 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Cca02g02650 304 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 35 44 IPR001345 GO:0003824
Cca02g02650 304 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Cca02g02650 304 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Cca02g02650 304 CDD SANT 77 116 IPR001005 -
Cca02g02650 304 Gene3D - 17 73 - -
Cca02g02650 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Cca02g02650 304 CDD SANT 22 67 IPR001005 -
Cca02g02650 304 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Cca02g02650 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Cca02g02650 304 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Cca02g02650 304 Gene3D - 76 118 - -
Cca02g02650 304 PANTHER TRANSCRIPTION FACTOR MYB21-LIKE 5 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02650 Cca-Chr2 47727811 47729566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02650 15 268 MYB Transcription Factor Family AT1G68320 52.747 5.88e-88 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca02g02650 Myb_DNA-binding 3.1e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02650 02 47727811 47729566 Cca02g02650 02 47727811 47729566 ECH