Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02644 ATGGACACCCAACTTGACTACAAAACTCAAAGACCAAACCCCACTTCCCCAACGGCCTTGAAGCTCTTTGGTTTCAGCGTCCACGAAGACATCACCATGGAAGACGAGGTCGTCATGCATGATGACGGGGAAGACACACCCTCCAAGGccacttccacctccacctccccttccccatctcactCGCCGGAATCCGCCGCAGCCGGTGCCGCCGACGGACCTCCTTCCTCCGCCGACCGGAAATACGAGTGCCAATACTGCTGCCGAGAGTTCGCAAATTCACAAGCACTTGGCGGCCACCAGAACGCGCACAAGAAAGAGCGTCAACAGCTCAAGCGTGCGCAGTTGCAAGCAACCCGAAACGCCGCCGTTTCGTTCGTGCGAAACCCGATGATCTCGGCCTTCGCCCCTCCGCCGCACCTGCTGGCTCCGCCGGGGACCGTGGTGGTCCCGGCGGCCCCGTCCTCGTGGGTGTACGTGCCGCCACGTGCCGCGCCTCCTCCCTTCCACGTGTCAGTGTCGCACGGTTGCGCCTTCCCGTCGGCGAATGCGTTGAGTAGTATTAACAGTAACAGGGATTCCTCATTAGCTTTGTCAACGGTGCAGGTTCAGGCCCGGGCCCACCATGCTAGGATTGATGGGCCCTCTTTGAGTAGGTTCTCCAAAGGGGACGGTGGGCCCAAGTTTGATGATGCATGGGGCTTGGACTTGCACCTTAGCCTCGCTCCAGCTGCGCCCTCTTCTCTCTAA 750 0.572 MDTQLDYKTQRPNPTSPTALKLFGFSVHEDITMEDEVVMHDDGEDTPSKATSTSTSPSPSHSPESAAAGAADGPPSSADRKYECQYCCREFANSQALGGHQNAHKKERQQLKRAQLQATRNAAVSFVRNPMISAFAPPPHLLAPPGTVVVPAAPSSWVYVPPRAAPPPFHVSVSHGCAFPSANALSSINSNRDSSLALSTVQVQARAHHARIDGPSLSRFSKGDGGPKFDDAWGLDLHLSLAPAAPSSL 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02644 249 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 109 IPR013087 -
Cca02g02644 249 MobiDBLite consensus disorder prediction 48 63 - -
Cca02g02644 249 SUPERFAMILY beta-beta-alpha zinc fingers 79 109 IPR036236 -
Cca02g02644 249 MobiDBLite consensus disorder prediction 1 20 - -
Cca02g02644 249 Gene3D Classic Zinc Finger 70 129 - -
Cca02g02644 249 MobiDBLite consensus disorder prediction 1 76 - -
Cca02g02644 249 PANTHER ZINC FINGER PROTEIN 5 13 246 IPR044299 GO:0010090
Cca02g02644 249 PANTHER ZINC FINGER PROTEIN GIS3 13 246 - -
Cca02g02644 249 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02644 Cca-Chr2 47628105 47628953 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02644 4 245 C2H2 Transcription Factor Family AT1G68360 44.186 2.69e-55 176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02644 02 47628105 47628953 Cca02g02644 02 47628105 47628953 ECH