Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02643 ATGGGGATGGGTTCCAAAATGGAAGGACCGTCTACCCCAGCAATTCGACGTGACCCATACGAGGTGTTATCCGTTTCTAGGGATTCAACCGATCAAGAAATTAAAACGGCCTACAGAAAGCTTGCTCTTAAGTATCACCCTGACAAGAATGCCAGCAACCCTGAAGCTTCGGAGTTATTTAAAGAGGTTGCATATTCTTATAGTATCTTGTCTGACCCAGAAAAGAGAAGGCAGTATGACAGTGCTGGATTTGAGGCACTTGATGCTGATAGCATGGACATGGAAATTGATTTGTCTAATCTTGGGACTGTGAACACAGTGTTTGCAGCTTTATTCAGTAAACTGGGTGTCCCTATCAAGACTACCATTTCAGCTAATGTTCTTGAAGAAGCTCTGAATGGAACAGTTACTATCAGACCCCTTCCAATTGGAACATCAGTTAGTGGAAAGGTAGACAAGCAATCTGCTCATTTTTTTAGTGTGACAATAAATGAGCAGCAAGCTGAGTCAGGTATTGTAGTGAGAGTTACTTCAACTGCACAAAGCAAATTCAAGTTGCTCTACTTTGAACAAGATGTGAATGGAGGCTATGGTTTGGCATTGCAGGAAGATAGTGAGAAGGCTGGCAAGGTGACATCTGCAGGAATGTATTTCTTACATTTTCAAGTGTATAGAATGGATTCAACAGTGAATGCGTTAGCAATGGCCAAGGATCCTGAAGGGGCCTTCTTTAAAAGGTTGGAAGGTCTTCAGCCTTGTGAAGTCTCAGAACTAAAGCCTGGCACTCATATATTTGCTGTCTATGGAGATAACTTCTTTAAGACTGCTAGCTATACGATTGAGGCAGTATGTGCAAAATCATATGAAGATACCACCCAAAAACTGAAGGACATTGAAGCTCAAATTTTAAGAAAGAGGAATGAGCTACGCCAATTTGAAGCAGAATATAGAAAGGCATTGGCACGCTACCAGGAAGTGACAGACAGATACACACAAGAAAAACAATCTGTAGACGAACTTCTGAAACAAAGGGATGGTATCCATTCTTCCTTTACTATTGTCAAGCCAACCAATATTAATGGAAGTGGTAGTAATTTAAGCAATGGAAGTTCTAGCAAAATTTCTGGTGAAGAGAGCCCTGGGGAAGATGGAGGGTCAGATGGCAAGGATAAATCAGGCAAAAAGAAATGGTTTAACTTGAATCTTAGGGGTTCTGATAAGAGGTTGGTTTAA 1233 0.4112 MGMGSKMEGPSTPAIRRDPYEVLSVSRDSTDQEIKTAYRKLALKYHPDKNASNPEASELFKEVAYSYSILSDPEKRRQYDSAGFEALDADSMDMEIDLSNLGTVNTVFAALFSKLGVPIKTTISANVLEEALNGTVTIRPLPIGTSVSGKVDKQSAHFFSVTINEQQAESGIVVRVTSTAQSKFKLLYFEQDVNGGYGLALQEDSEKAGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEGAFFKRLEGLQPCEVSELKPGTHIFAVYGDNFFKTASYTIEAVCAKSYEDTTQKLKDIEAQILRKRNELRQFEAEYRKALARYQEVTDRYTQEKQSVDELLKQRDGIHSSFTIVKPTNINGSGSNLSNGSSSKISGEESPGEDGGSDGKDKSGKKKWFNLNLRGSDKRLV 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02643 410 MobiDBLite consensus disorder prediction 1 30 - -
Cca02g02643 410 CDD DnaJ 18 72 IPR001623 -
Cca02g02643 410 Pfam DnaJ domain 18 80 IPR001623 -
Cca02g02643 410 MobiDBLite consensus disorder prediction 358 377 - -
Cca02g02643 410 Gene3D DnaJ domain 5 100 IPR036869 -
Cca02g02643 410 PANTHER CHAPERONE PROTEIN DNAJ 15-LIKE 4 408 - -
Cca02g02643 410 Coils Coil 288 343 - -
Cca02g02643 410 SUPERFAMILY Chaperone J-domain 17 87 IPR036869 -
Cca02g02643 410 MobiDBLite consensus disorder prediction 380 410 - -
Cca02g02643 410 MobiDBLite consensus disorder prediction 358 410 - -
Cca02g02643 410 ProSitePatterns Nt-dnaJ domain signature. 60 79 IPR018253 -
Cca02g02643 410 SMART dnaj_3 17 75 IPR001623 -
Cca02g02643 410 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 4 408 - -
Cca02g02643 410 PRINTS DnaJ domain signature 20 38 IPR001623 -
Cca02g02643 410 PRINTS DnaJ domain signature 38 53 IPR001623 -
Cca02g02643 410 PRINTS DnaJ domain signature 55 75 IPR001623 -
Cca02g02643 410 PRINTS DnaJ domain signature 75 94 IPR001623 -
Cca02g02643 410 ProSiteProfiles dnaJ domain profile. 18 83 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02643 Cca-Chr2 47610880 47617264 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02643 11 90 C2H2 Transcription Factor Family AT1G74250 42.353 5.26e-13 68.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02643 02 47610880 47617264 Cca02g02643 02 47610880 47617264 ECH