Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02642 ATGTTGAAACCATTAGAAAACCCAGAAACCGATAGTGATAAGCGAATGGTGTTACTTAGGATTGTGTCTAGAAAGAAGAAGATTCAAGTAAACAACGCAGAACGCCAAAGAGCGCCAAAAATATTCCACCCACTCCGGAGGTGGCCCGTAAATGCTCGTAGCCTCGGAACTTCAACCCAATCCATGGCAACTCACCGACTCGCTTTGCTAATCCAAAACCCTTCAAACGACGATGAGTTTCTGCTCGTCAAGCAGTCTCGCCCTCCCAAATTCAACGATGAAGAGTACGACTCTTTCGTCGATTCTGATCTTTGGGACTTGCCCTCGGCGCTGTTGAATCCGCTGCCTCCAGAATCAGAGCCCTTTCTTCAGCTCGACGTTGCTGGCTCTCATTCCGAATCCGAGGGCTTCCATTTCAGGGAATTTGACATCCGTTCGGCTCTCAATGAGGTGTTTGGACAACTAGGGCTTCAGGCGGTTCAAGGAACAGAATGGAAGTTCCATAAATATGTGAAGGAACCTGCCTTTGGACCCGATCTGCCCGTTAACACAGTTTTCATTGTCGGAAAATTGGTAGCAGCTGAAGAAAAGGACTTTAGAGATTCATATAGATGGATATCTGTTCAAAGCTGTCTTAACTGGATTTTGGAAGTGAAACCACATGGAGACCGGCTTGGACCATTGGCAGTTGTTGGTCTTATAAACAAATCATCTATCTCTACAGGGTGGAAAGTCCCTCCAGCCATAAACTATCAGGAGTACCCACCCGGTGTTATAATTGTACCTATGGGAAGTAGGACATTAATACCTTTTCGCAAGACAAATTTGGTGGTGTTTGCACCTGAGAATGTCCCAAATGATTCAGAGGAAAATGATTTTATTGCACGGGGAGATGCACTAATAGTTGATCCAGGATGCTTACCAGAATTCCACGGAGAGCTAAAGAAAATAGTTACTGCCTTACCCAGACGACTAGTGGTCTTTCTCACTCATCATCACCATGATCATGTAGATGGTCTCTCAGTTATCCAGAAGTGCAATCCTGATGCTACTTTGTTAGCACATGATAGGACCATGCATCGCATAAGCAAAGATGATTGGTCACTTGGTTATACCTCAATTAAGGGAGATGAAGACATTAACATTGGTGGTCAGAGATTTAAAGCTATTTTTGCACCGGGACATACAGAGGGTCATATGGCACTGCTTCATGTAAATACTCATTCCTTGATTGTAGGTGATCATTGTTTGGGTCAAGGAAGTGCGGCATTGGACATAACATCTGGTGGAAATATGTTTGAATACTTCAAAACCACCTACAAATTTCTGGAGCTTTCACCACATGTTTTAATACCAATGCACGGGAGATTTAATCTCTGGCCAAAGCATATGCTGTCTGAATATCTGAAGAATCGTAGGAGTAGAGAAACCGATATCATGAAAGCAATTGAAGGTGGAGCGAAAACATTGTTTGACATTGTTGCATATGTTTATTCTGAAGTTGACCGACGAGCCTGGTTTGCTGCATCATCAAATGTGAGGCTCCATGTGGATCATCTAGCCCAGCAACACAAGTTACCAAAGGATTTCTCTCTAGAAACTTTCAGTTCCAGTTTGGTTACATTTGCTGACAATGTGGGAAACGTCTTTGTCGTTTCAACATTGCACACTGTACCAGCAACAGATGGCACCAGATACAAACTGCATTTTCCTTGTTTCCAAAACCAGCTATTACTGTTTCTCTCTTTGGCAGGCTCTTTTCAACAAAGCTCTTTCATTCTGTTCTTTCTCTATCACCTTCTGCTTGCAGTTTTCATCATATTTTGGATCAGATTGAAGGAGTTCCTTAAGCCACCTCATGTTGTGCATGATATGGATGATGAGGAATTGCTATGGAGAGCTTCAATGAGTGCAAAGATCCCTGATTACCCGTTTGATCGTGTTCCAAAAGTTGCCTTCATGTTCTTGACAAGGGGTCCTGTGTTTTTGGCACCTTTGTGGGAGCAATTCTTCAAAGGGCATGAAGGATATTACTCAATTTACGTGCATTCCAATCCTTCATACAATGCATCACGCCCGGAGAGTCCAGTGTTTCAGGCTCGGAGAATTCCCAGTAAGGAAGTGGAATGGGGTAACGTGAACATGGTCGAAGCAGAGCGTCGCTTGCTGGCGAATGCACTTCTTGACATCTCAAACCAACGTTTTGTACTGTTGTCAGAATCCTGCATACCACTCTTCAACTTCTCAACCATCTACTCTTACTTGATGAACTCTACCCAAAACTATGTCATGGCTTTTGATGATCCCAGTCCTGTTGGCCGAGGCCGTTACAGCATCCAGATGTTGCCCGAGATCTCCCTCAAGCAATGGAGAAAAGGGTACCAATGGTTTGAAATGGACAGAGGGCTTGCACTCGATGTAGTATCTGACAGAAAATACTTCCCAGTTTTTCAAGAGTACTGCAGAGGGTCATGTTACGCAGATGAACATTACTTGCCAACGTACGTGAGCATCAAGTTCTGGGAGGGGAATTCAAATAGGAGTTTGACTTGGGTTGACTGGTCAAAGGGTGGTCCTCACCCATCTAAATTTTTGAAATCAGATATTACTGTTAAGTTCTTGGAGAGTTTAAGGAATCATAAATGCAAGTATAACGGAGACAGCACCAATGCTTGTTTTCTGTTTGCTAGGAAGTTCGCTCCTAGTACTCTGTCAAAGCTCATCAAGATTGCACCTATGGTTATGCATTTCTAA 2754 0.435 MLKPLENPETDSDKRMVLLRIVSRKKKIQVNNAERQRAPKIFHPLRRWPVNARSLGTSTQSMATHRLALLIQNPSNDDEFLLVKQSRPPKFNDEEYDSFVDSDLWDLPSALLNPLPPESEPFLQLDVAGSHSESEGFHFREFDIRSALNEVFGQLGLQAVQGTEWKFHKYVKEPAFGPDLPVNTVFIVGKLVAAEEKDFRDSYRWISVQSCLNWILEVKPHGDRLGPLAVVGLINKSSISTGWKVPPAINYQEYPPGVIIVPMGSRTLIPFRKTNLVVFAPENVPNDSEENDFIARGDALIVDPGCLPEFHGELKKIVTALPRRLVVFLTHHHHDHVDGLSVIQKCNPDATLLAHDRTMHRISKDDWSLGYTSIKGDEDINIGGQRFKAIFAPGHTEGHMALLHVNTHSLIVGDHCLGQGSAALDITSGGNMFEYFKTTYKFLELSPHVLIPMHGRFNLWPKHMLSEYLKNRRSRETDIMKAIEGGAKTLFDIVAYVYSEVDRRAWFAASSNVRLHVDHLAQQHKLPKDFSLETFSSSLVTFADNVGNVFVVSTLHTVPATDGTRYKLHFPCFQNQLLLFLSLAGSFQQSSFILFFLYHLLLAVFIIFWIRLKEFLKPPHVVHDMDDEELLWRASMSAKIPDYPFDRVPKVAFMFLTRGPVFLAPLWEQFFKGHEGYYSIYVHSNPSYNASRPESPVFQARRIPSKEVEWGNVNMVEAERRLLANALLDISNQRFVLLSESCIPLFNFSTIYSYLMNSTQNYVMAFDDPSPVGRGRYSIQMLPEISLKQWRKGYQWFEMDRGLALDVVSDRKYFPVFQEYCRGSCYADEHYLPTYVSIKFWEGNSNRSLTWVDWSKGGPHPSKFLKSDITVKFLESLRNHKCKYNGDSTNACFLFARKFAPSTLSKLIKIAPMVMHF 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02642 917 Gene3D - 462 533 IPR036388 -
Cca02g02642 917 Gene3D - 293 461 IPR036866 -
Cca02g02642 917 PANTHER CORE-2/I-BRANCHING ENZYME 582 917 - -
Cca02g02642 917 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 582 917 IPR044174 GO:0016757
Cca02g02642 917 Pfam Beta-lactamase associated winged helix domain 489 525 IPR041516 -
Cca02g02642 917 SUPERFAMILY Metallo-hydrolase/oxidoreductase 296 526 IPR036866 -
Cca02g02642 917 SMART Lactamase_B_5a 289 454 IPR001279 -
Cca02g02642 917 Pfam Core-2/I-Branching enzyme 651 877 IPR003406 GO:0016020|GO:0016757
Cca02g02642 917 Pfam Metallo-beta-lactamase superfamily 296 417 IPR001279 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02642 Cca-Chr2 47563954 47584764 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02642 02 47563954 47584764 Cca02g02642 02 47563954 47584764 ECH