Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02641 ATGGGAGCAACGCTCATTGCTACCCTTCTGCTTCTCCATTTTCTTCTTCTCACGGTTCAAGGTAGTAACCCAGATTTGGACGCTCTGGTAGCCTTCAAAACCGCTTCAGACACGTCCCAAAAGCTCACCACATGGAACACCAGCACCACCAACCCCTGTTCGTGGAGCGGCGTCTCCTGCACTCGCCACCGAGTCTCGCGACTCGTTCTCGAAAACCTAAACCTCCAAGGCTCCATTCACCCCTTAACGTCCTTAACTCACCTCCGAGTTATCAGCCTCAAAGGAAACCGTTTCTCCGGTCCCCTCCCCAACCTCTCCAACCTCACCGCTCTCAAGCTCCTCTTTTTATCCAACAACCACTTCTCCGGCGACTTTCCGCCCTCCCTCACGTCGCTCTCCCGCCTCTACCGCCTCGATCTCTCCAACAACAACCTCTCCGGCGAGCTTCCGGCCACGCTCACCCACTTCACCCACCTCCTCACTCTCCGCCTCGACGCAAACAACTTCTCCGGCCACATTCCCGACGTCAACCTTCCCACCCTCCAAGACTTCAACGTCTCCGGTAACCGCCTCTCCGGCGAGATACCCAAAGCCTTGTCAACTTTCCCCGATTCCTCATTCGGGCAAAATCCGTTTCTCTGCGGCGCCCCATTAAAAAAATGCGCATCAGACCCGACCAAACCGGGATCCGAAGGTGCCATCGCTTCACCATTGTCACCCCAAAACAACATTCCCCCAACAACTACCGTATCCTCTTCCCCGAGTTCAATGCCGAAAACAACAACATCAAGTAGTAAAAATCACGAGAAGGGTGGTTCTAAAATAAGCCCGGTGGCTCTTATAGCTATTATAGTGGGTGATGTTTTGGTTCTTGGTTTAGTTTCTTTGCTTTTGTACTGCTACTTCTGGAGGAACTACTCTGCGAAGCTGAAGGAGGGGAAGGGGTCGAAGCTTTTCGAGAGTGAAAAGATTATTTATTCATCGAGTCCTTACCCTGCTCAGGGAGGTTTTGAGAGGGGTCGAATGGTGTTCTTCGAAGGGGAGAAAAGGTTTGAGCTTGAGGACTTGCTGCGAGCCTCTGCGGAAATGCTTGGGAAGGGTGGGTTCGGGACTGCGTACAAAGCGGTTCTCGATGACGGGAACGTGGTTGCGGTGAAGAGGCTGAAGGACGCGCAGATAACAGGAAAGAGGGAGTTCGAGCAGCACATGGAGGTGTTGGGAAGGCTGAGACACCCCAACGTTGTTAGCTTGAGGGCTTACTATTTCGCGCGCGAGGAGAAGTTGCTCGTTTATGATTACATGCCCAATGCCACCTTGTTCTGGCTCCTCCACGGGAACCGAGGACCCGGAAGGACCCCACTGGACTGGACCACGAGGCTGAAGATAGCAGCTGGTGCGGCCCGAGGCGTGGGCTTCATTCACAGCTCCTGCAAGTCCCTTAGGCTCACCCACGGTAACATCAAATCCACCAACGTCTTACTCGACAAGCACGGCAACGCGCGGGTATCCGATTTTGGGCTCTCGGTGTTCGCGGGCCCAGGCCCAGGCCCACTGGGAGGGAGGTCGAACGGGTACCGCGCGCCCGAGGCATACGATGGTCGAAAACAGACCCACAAGTCTGACGTGTACTCCTTCGGCGTGCTCTTGCTGGAGCTGCTCACGGGGAAGTGCCCCTCCGTGGTGGAGAGTGCAGGGAGTGCTTACGGTGGGGTCGTGGATCTACCGCGGTGGGTCCAATCAGTGGTGAGGGAGGAGTGGACCGCTGAGGTGTTTGACTTGGAACTTATGAGGTATAAAGATATCGAGGAGGAGATGGTGGGGCTGCTTCAGATTGCCATGTCGTGTACTGCACCTGCACCGGATCAACGCCCCAGGATGACCCACGTCATTAAGATGATTGAGGAGTTGCGTGGGGTCGAGGTGTCACCTTCTCATGACACGTTGGATTCGGTTTCTGAGTCACCTTCCTTGTCTGAAGATGCGTGTGGAACGAGTCAGTGA 2001 0.5497 MGATLIATLLLLHFLLLTVQGSNPDLDALVAFKTASDTSQKLTTWNTSTTNPCSWSGVSCTRHRVSRLVLENLNLQGSIHPLTSLTHLRVISLKGNRFSGPLPNLSNLTALKLLFLSNNHFSGDFPPSLTSLSRLYRLDLSNNNLSGELPATLTHFTHLLTLRLDANNFSGHIPDVNLPTLQDFNVSGNRLSGEIPKALSTFPDSSFGQNPFLCGAPLKKCASDPTKPGSEGAIASPLSPQNNIPPTTTVSSSPSSMPKTTTSSSKNHEKGGSKISPVALIAIIVGDVLVLGLVSLLLYCYFWRNYSAKLKEGKGSKLFESEKIIYSSSPYPAQGGFERGRMVFFEGEKRFELEDLLRASAEMLGKGGFGTAYKAVLDDGNVVAVKRLKDAQITGKREFEQHMEVLGRLRHPNVVSLRAYYFAREEKLLVYDYMPNATLFWLLHGNRGPGRTPLDWTTRLKIAAGAARGVGFIHSSCKSLRLTHGNIKSTNVLLDKHGNARVSDFGLSVFAGPGPGPLGGRSNGYRAPEAYDGRKQTHKSDVYSFGVLLLELLTGKCPSVVESAGSAYGGVVDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIAMSCTAPAPDQRPRMTHVIKMIEELRGVEVSPSHDTLDSVSESPSLSEDACGTSQ 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02641 666 SUPERFAMILY L domain-like 34 219 - -
Cca02g02641 666 SUPERFAMILY Protein kinase-like (PK-like) 362 633 IPR011009 -
Cca02g02641 666 Gene3D Ribonuclease Inhibitor 22 176 IPR032675 -
Cca02g02641 666 MobiDBLite consensus disorder prediction 235 271 - -
Cca02g02641 666 Gene3D Ribonuclease Inhibitor 177 225 IPR032675 -
Cca02g02641 666 MobiDBLite consensus disorder prediction 645 666 - -
Cca02g02641 666 Gene3D Phosphorylase Kinase; domain 1 338 433 - -
Cca02g02641 666 MobiDBLite consensus disorder prediction 224 272 - -
Cca02g02641 666 Gene3D Transferase(Phosphotransferase) domain 1 434 652 - -
Cca02g02641 666 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 19 652 - -
Cca02g02641 666 Pfam Leucine rich repeat N-terminal domain 23 60 IPR013210 -
Cca02g02641 666 PANTHER - 19 652 - -
Cca02g02641 666 ProSitePatterns Protein kinases ATP-binding region signature. 364 386 IPR017441 GO:0005524
Cca02g02641 666 Pfam Protein kinase domain 362 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02641 666 ProSiteProfiles Protein kinase domain profile. 358 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02641 666 MobiDBLite consensus disorder prediction 641 666 - -
Cca02g02641 666 CDD STKc_IRAK 364 636 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02641 Cca-Chr2 47560567 47563447 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02641 25 666 Receptor kinase-like Gene Family AT1G68400 67.576 0.0 837
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Cca02g02641 Pkinase 2e-34 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02641 02 47560567 47563447 Cca02g02641 02 47560567 47563447 ECH