Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02636 ATGTGTGGCGTTAATGAAGTCCTTTTGATTTGTTGTTTGTGGGTGGTGATTGTGTTGGGTGGGAATGCAAATGGGCATGAACATGAGTATGATGATTGTCCAGAGTCATTTGATTGCGGAAGTTTGGGAAAAATTTCCTTCCCTTTCAGCAGCGTAGAAAGGCAGAAGTGTGGTGTTTTGGCAATCCATGGGTGCAGTGATGTTAAGCAAAGTGTCCAGTTGAAGAATGGAGGAAAACATTTCAAAGTTACACGAGTTAATTCTTATAGTCAGTGGCGGCGGACTAGTATTTCCATGATCGACGAGGATTTTTTGAAGCTTGTGCAAAATGATAGTTGTGAGGCCCTCAGCTATAATATTAGCGTCCCTCCCTCCTCTCCTTTGGGTTATTTTGATGTGAAAAACAATGTAACAGTCTTCGAATGCAGCAAGCAGAAGAAAGTGAAGGATACAGATAATTTCATCAAGTATACCACATGTTCCTCTGATTTTTACTTTGCCTCTTCCTACTCTCCTCACCCCTCTCTGCGCTCTTTAAACTCCTCATGTTCTATTTTTCAACTTCCCGTCATACAAGATTCCCAGTTCAACAAAAATCCTTTTGGATTTCTGACTGCTGAAATTACCTTTGACTTCCACTTTTCACTTGCCTGTGATCAGTGTCGAACCAACCAAGGAGGCCATTGTCGATCTGACAGCAAGGGAAATATTTATTGTACCCGGAGGAGGAAAGGTAGAGTTTCGACCACTCGGAAGCTAGGATTGATGCTAGGCATCGGTGTTGGACCATGGATCATATTTGGATTGATCCTCACGTTACGGCACTACAAACGGAAATATGGTTCCGAACGCGTTCAACTCCAATTGAGCAACACTTCTGCTGATCCCTACCCAAATCGTGACACAGAGAGTGACAGGATCTTCTTTGGGGTACCCGTCTTTTCTTATAAGGAACTTCAAGAAGCAACAAACAATTTTGATCATACTAGAAAGCTAGGAGATGGAGGCTTTGGCACTGTTTACTATGGCACACTAAGAGATGGAAGAGAAGTAGCAATCAAGCATCTATTTGAGCACAATTACAGGAGAGTGGAACAGttcatgaatgaaattgagatcctcactcggctacgccacagaaaccttgtgtccctctatggctgcacttcacgacacggccacgagctattgcttgtgtatgaatacattccaaatggcacagttggtagccatgtccatggtgatttagcaagggttggtctgttgacatggtctattcgaatgcaaattgccatagaaactgctactgcattggcttatctgcatgcctccaacatcatccaccgtgatgtgaaaaccaacaacattctacttgacattaatttttcggttaaggtagcagattttggtctttcaagattgctccccaacgacgtaagtcatgtctccacagctccacaaggctctccggggtatcttgaccctgaatatttccaatgctacagactcactgacaagagtgatgtgtatagctttggggttgtgctcatggagttgatatcatctatgccagcggttgatgcagcCAGAGAACGAGATGAAGTTAACTTGACAAATCTTGCCATGAAAAAGATTCGAAAGGGAAAGCTTGGTGAGCTTGTAGACCCTTCCTTGGGGTTTGAGTCAGACCAACAAGTTAGAAGGATGATGACTTCAGTGGCAGAATTGGCTTTTCGGTGCGTGCAAGGACACGTTGTATTAAGGCCTTCTATGGATGAAGTTCTGGAAACACTCAAGATAATTCAAAGTGGGAAATATGACTCTCAGCCTGCGCATCAACAGAAACAAGGTGATGGTGGTTTTATCTTTTCGACTTCCACTTCAATTGAAGAAGTACATGCATCTGTTGGAATTTTTAACGATCAGAAGCTAGCAGACTCACCAAATTCCTTCACTCAGAATAGGGAAAGTGAATCCAACACGCCCAATGTTAGTGGTTAA 2001 0.3208 MCGVNEVLLICCLWVVIVLGGNANGHEHEYDDCPESFDCGSLGKISFPFSSVERQKCGVLAIHGCSDVKQSVQLKNGGKHFKVTRVNSYSQWRRTSISMIDEDFLKLVQNDSCEALSYNISVPPSSPLGYFDVKNNVTVFECSKQKKVKDTDNFIKYTTCSSDFYFASSYSPHPSLRSLNSSCSIFQLPVIQDSQFNKNPFGFLTAEITFDFHFSLACDQCRTNQGGHCRSDSKGNIYCTRRRKGRVSTTRKLGLMLGIGVGPWIIFGLILTLRHYKRKYGSERVQLQLSNTSADPYPNRDTESDRIFFGVPVFSYKELQEATNNFDHTRKLGDGGFGTVYYGTLRDGREVAIKHLFEHNYRRVEQFMNEIEILTRLRHRNLVSLYGCTSRHGHELLLVYEYIPNGTVGSHVHGDLARVGLLTWSIRMQIAIETATALAYLHASNIIHRDVKTNNILLDINFSVKVADFGLSRLLPNDVSHVSTAPQGSPGYLDPEYFQCYRLTDKSDVYSFGVVLMELISSMPAVDAARERDEVNLTNLAMKKIRKGKLGELVDPSLGFESDQQVRRMMTSVAELAFRCVQGHVVLRPSMDEVLETLKIIQSGKYDSQPAHQQKQGDGGFIFSTSTSIEEVHASVGIFNDQKLADSPNSFTQNRESESNTPNVSG 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02636 666 Pfam Protein tyrosine and serine/threonine kinase 329 597 IPR001245 GO:0004672|GO:0006468
Cca02g02636 666 ProSitePatterns Protein kinases ATP-binding region signature. 332 354 IPR017441 GO:0005524
Cca02g02636 666 MobiDBLite consensus disorder prediction 645 666 - -
Cca02g02636 666 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 19 665 IPR044652 -
Cca02g02636 666 Gene3D Phosphorylase Kinase; domain 1 299 402 - -
Cca02g02636 666 SUPERFAMILY Protein kinase-like (PK-like) 309 596 IPR011009 -
Cca02g02636 666 PANTHER WALL-ASSOCIATED KINASE-LIKE PROTEIN 19 665 - -
Cca02g02636 666 ProSiteProfiles Protein kinase domain profile. 326 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02636 666 SMART serkin_6 326 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02636 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672|GO:0006468
Cca02g02636 666 Gene3D Transferase(Phosphotransferase) domain 1 403 609 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02636 Cca-Chr2 47519084 47522503 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02636 35 666 Receptor kinase-like Gene Family AT1G25390 45.046 5.21e-161 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Cca02g02636 PK_Tyr_Ser-Thr 9.7e-46 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02636 02 47519084 47522503 Cca02g02636 02 47519084 47522503 ECH