Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02634 ATGGCCCCTGCTCTTATTTTGAAATCACTCATAATATTTTTGTCCCAGCTTCTTGTTTCAGCTGAAGATGAAACGTGTCCAGCCTCTTTGGATTGTGGAGATCTTGGCCAGATTAAGTTTCCTTTCACAACCACACTGCGACCACACTGTGGCCTATTGCCCATACGTGGTTGTGAACAAAAAGATCCCTACGCTCCCAAAACCATTCAACTCAACAATCCAACACCAAGAACCTACAATGTTCTACAGGTTGAACCTCGTACCATAATGATCATAGACGATGATCAATATCATTATTTGCAAACCAACAATTGCAAACTCTTCACCAACAATTTTACTCTTCCTCACGCCTCTCTTTTAGCTTCTTTCTACATCAAATATAATATCACTGTCTTCAGATGCAATCACTCCCTCAAGGCCACCCTTCCCAACCATTTTTATAAATATTCAAATTGTTTTGACTATGATATCTACTATGGCCCTCCAAATACTGAAATTCCTTTGGGCTTCAAGTGGCCAAGCTCATTAGCACCATGTTCAACCATTCAGCTTGCAGTACAAGCAAAATCTACTAACAATCCATTTCAATTTCTATCTGCTAGTATCGCTATTGAAGTGCGATTATCTGAGGCTTGTGAAAGTTGTCTTCATCATGGAGAAGGCCAATGTTTACTTGACGGTAAAGGAACATTTTATTGCGCCAAAGGTATGCAATTATTTTCGAGTATTGGACTCCCTGCCACAATTATAATTGGGCTACTGATCATATGGCACCGCAAACCAAGATGTGTGTCTGCTCTCTACTCAGATTCATATCTAGAAAGCGAGAGTATCTACTTTGGGGTCCCTGTGTTCACCTATAAGGATCTTGAAAAAGCAACAAAACGTTTTGATCGTTCCAGAGAACTTGGAGAAGGAGGATTTGGGATTGTTTACTATGGAAAACTTATCGATGGACGTGAAGTTGCTGTGAAGCGCCTATATGAGCACAACTACAGGCGATTAGAACAATTCATGAATGAAATCAAGATCCTCACACACTTACGCCACAAAAATTTAGTGTCTCTTTATGGCTGCACTTCACGTCACAGCCGTGAACTATTGCTCGTGTTTGAATACATTTCAAATGGGACGGTGGCCAGTCACCTCCATCATCATGGATCAACAAATCGTAGCTTTTTACCATGGCCTATCCGAATCAAAGTTGCCATAGAGACTGCTACTGCATTGGCCTATCTCCATGCTTCTGACatcattcaccaTCTAGCCATAAGGAAGATTCAAAAAAGTGCAATGGCTCAGTTGGTGGATACATCCCTTGGTTTTGAGTCAAATAGTGATGTTAAAAGGCAAATAACATCAGTGGCAGAATTGGCTTTTCAGTGCTTGCAACGAGATAAAGAATTGAGACCCTCCATGGATGAAGTTTTGGAGTTGTTGAAGGCAATTGAAAGTCACAAGGATGAAAGTGCACATGTGGAGGAAGTAAAAGTTGAGGGTGAAGGTCCATCTTTAGCTGATGGTGATGAAGTGAAATTGTTGAGAAATATGAAGATGAGGCCTTCACCAAAAGCCGTGACAGATAAATGGGACAGTCAATCCACTAGTTCTAATGTCAATGCCCAATCGTCAAGCCAAATCTAG 1644 0.4075 MAPALILKSLIIFLSQLLVSAEDETCPASLDCGDLGQIKFPFTTTLRPHCGLLPIRGCEQKDPYAPKTIQLNNPTPRTYNVLQVEPRTIMIIDDDQYHYLQTNNCKLFTNNFTLPHASLLASFYIKYNITVFRCNHSLKATLPNHFYKYSNCFDYDIYYGPPNTEIPLGFKWPSSLAPCSTIQLAVQAKSTNNPFQFLSASIAIEVRLSEACESCLHHGEGQCLLDGKGTFYCAKGMQLFSSIGLPATIIIGLLIIWHRKPRCVSALYSDSYLESESIYFGVPVFTYKDLEKATKRFDRSRELGEGGFGIVYYGKLIDGREVAVKRLYEHNYRRLEQFMNEIKILTHLRHKNLVSLYGCTSRHSRELLLVFEYISNGTVASHLHHHGSTNRSFLPWPIRIKVAIETATALAYLHASDIIHHLAIRKIQKSAMAQLVDTSLGFESNSDVKRQITSVAELAFQCLQRDKELRPSMDEVLELLKAIESHKDESAHVEEVKVEGEGPSLADGDEVKLLRNMKMRPSPKAVTDKWDSQSTSSNVNAQSSSQI 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02634 547 ProSiteProfiles Protein kinase domain profile. 297 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02634 547 MobiDBLite consensus disorder prediction 527 547 - -
Cca02g02634 547 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 1 420 IPR044652 -
Cca02g02634 547 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 422 547 - -
Cca02g02634 547 Gene3D Phosphorylase Kinase; domain 1 271 371 - -
Cca02g02634 547 SUPERFAMILY Protein kinase-like (PK-like) 276 420 IPR011009 -
Cca02g02634 547 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 422 547 IPR044652 -
Cca02g02634 547 MobiDBLite consensus disorder prediction 490 525 - -
Cca02g02634 547 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 1 420 - -
Cca02g02634 547 Pfam Protein tyrosine and serine/threonine kinase 300 427 IPR001245 GO:0004672|GO:0006468
Cca02g02634 547 Gene3D Transferase(Phosphotransferase) domain 1 422 502 - -
Cca02g02634 547 Gene3D Transferase(Phosphotransferase) domain 1 372 421 - -
Cca02g02634 547 MobiDBLite consensus disorder prediction 490 547 - -
Cca02g02634 547 ProSitePatterns Protein kinases ATP-binding region signature. 303 325 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02634 Cca-Chr2 47508109 47510697 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02634 422 541 Receptor kinase-like Gene Family AT1G25390 43.902 5.16e-23 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Cca02g02634 PK_Tyr_Ser-Thr 5.4e-23 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02634 02 47508109 47510697 Cca02g02634 02 47508109 47510697 ECH