Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02632 ATGGCTCCAGTTGATTTGTTCTGTTTCCTCTTCTTCTCTCACCTTGTAATCATTCTCTCTGCTGGTTATGGAAATGGGCACCAAGATTGTCCACACTCCTTTACTTGTGGCCATCTTGGTACTTTCTATTACCCTTTCACCAAGGCAGAACAACCACACTGTGGCTTGCTACCGATACATGATTGTGATAATCCTCATTCACCCATTATAACGATCCAGCTGGAGAAAAATGGAAAAAACTTAGAGCTTAATGGCATCACGCAGCAGAATGCGATTTCGATTTTGGATGAAGATTTTCATAAGAGTTTACAACAAAACACTTGCGGCACTTTGAACAATAATTATAGTCTTCCTTCCCCTTCTCCTTTGTATTCTATTTATATAAAATATAACGTAACCCTGTTCCGATGCAAACAGGGCCTCAAAATCAACCAACCACCAAAACATTATTTGAAATACCCGTGCCATGGCTATGAGTATGATATTTATTATGACAGCCTTCCCTCTCCAAATAATGAGGAGGCTCATAACTTATTCTCATCCTGCTCAGTTTTTCAGTTACCATCAAAAGACAAGACGGATACCAAAGACATTCTATCGTTTGTAACTGCTGAGATGGTTCTTCAAGTACTATTATCTAATGATTGTGATGAGTGCTATAATCACAGAGGAGGCCAATGTCGGCTTGACAGCAATCAAAAGTTCTACTGCGACACAGTGATATTTGGAATTTATGATCCCCTTGTTGCAGGTTTAAGTGTTATATTCTCAGTTATTCTAATCATTGGATGCATACGTAAACACAGTCCTTCGAACCCCCAATCCCAATCAAGAAACAGACACACGGATGTAATTGATCCAAGATCAAATCCAGACCCAGAAAATGGGAGGGTCTACTTTGGAATCCCTCTCTTCTCTTACAAGGAGCTTGAAGAAGCTACATATAATTTCCACCACGCCAGACAACTCGGAAGTGGAGGCTTTGGAACAGTTTACTATGGAAAACTTCGAGATGGAAGAGAAGTTGCTGTGAAACGCCTATATGAGCACAACTGCAGGCGAGTAGAACAGTTCATGAACGAAGTTCACATCCTCACACGCTTGCGCCACAGGAATCTGGTGTCCCTCTATGGCTGCACCTCACGTCAAAGCCACGAACTACTTCTTGTGTACGAACATGTTCCAAACGGCACCGTAGCATGCCATCTCCACGGTGATTTAGCTAGGCGCGGCACTCTTCCGTGGCACATAAGAATGAAAATCGCCATAGAGACGGCAAGTGCATTGGCTTATCTCCATGCTTCTGACaccatccaccgtgatgtgaaaaccatgaacattctccttaacgaaagtttcagcgttaaggttgcagactttggtctttcaagGCATAGGGATGAGATTAACTTGTCTAGTTTAGCCATAAAGAAGATTCAGCAAAGTGCATTTAGTGAGCTGGTTGATCCTTCTCTTGGTTTTGATTCGGACATTGAGGTGAAGAGGATGATGGTTTCGGTGGCGGAATTGGCTTTTCAGTGTTTGCAACGGGACAAGGAATTGAGACCCTCTATGGATGAGGTTTTGAAGGTGCTCATGAGGATTGAAAGTGGGAAGGATATGGCTGAGCATATGGATGAAGAAGATTTGCGTCCACCCTCTCTACCTTCCCCAGATTGGGACGAGAATCCATTGTTCAAGAAGATCATGGCACATCCTTCACCTAAAGCCGTGACTGATACATGGCATAGTCAATCTACTACGCCTAATGTTAGTGCTTAA 1782 0.4085 MAPVDLFCFLFFSHLVIILSAGYGNGHQDCPHSFTCGHLGTFYYPFTKAEQPHCGLLPIHDCDNPHSPIITIQLEKNGKNLELNGITQQNAISILDEDFHKSLQQNTCGTLNNNYSLPSPSPLYSIYIKYNVTLFRCKQGLKINQPPKHYLKYPCHGYEYDIYYDSLPSPNNEEAHNLFSSCSVFQLPSKDKTDTKDILSFVTAEMVLQVLLSNDCDECYNHRGGQCRLDSNQKFYCDTVIFGIYDPLVAGLSVIFSVILIIGCIRKHSPSNPQSQSRNRHTDVIDPRSNPDPENGRVYFGIPLFSYKELEEATYNFHHARQLGSGGFGTVYYGKLRDGREVAVKRLYEHNCRRVEQFMNEVHILTRLRHRNLVSLYGCTSRQSHELLLVYEHVPNGTVACHLHGDLARRGTLPWHIRMKIAIETASALAYLHASDTIHRDVKTMNILLNESFSVKVADFGLSRHRDEINLSSLAIKKIQQSAFSELVDPSLGFDSDIEVKRMMVSVAELAFQCLQRDKELRPSMDEVLKVLMRIESGKDMAEHMDEEDLRPPSLPSPDWDENPLFKKIMAHPSPKAVTDTWHSQSTTPNVSA 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02632 593 Gene3D Transferase(Phosphotransferase) domain 1 468 549 - -
Cca02g02632 593 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 462 592 IPR044652 -
Cca02g02632 593 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 6 464 IPR044652 -
Cca02g02632 593 SUPERFAMILY Protein kinase-like (PK-like) 293 538 IPR011009 -
Cca02g02632 593 MobiDBLite consensus disorder prediction 574 593 - -
Cca02g02632 593 Gene3D Phosphorylase Kinase; domain 1 293 393 - -
Cca02g02632 593 MobiDBLite consensus disorder prediction 542 565 - -
Cca02g02632 593 Pfam Protein tyrosine and serine/threonine kinase 319 466 IPR001245 GO:0004672|GO:0006468
Cca02g02632 593 MobiDBLite consensus disorder prediction 578 593 - -
Cca02g02632 593 ProSitePatterns Protein kinases ATP-binding region signature. 323 345 IPR017441 GO:0005524
Cca02g02632 593 Gene3D Transferase(Phosphotransferase) domain 1 394 467 - -
Cca02g02632 593 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 462 592 - -
Cca02g02632 593 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 6 464 - -
Cca02g02632 593 MobiDBLite consensus disorder prediction 269 295 - -
Cca02g02632 593 SMART serkin_6 317 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02632 593 ProSiteProfiles Protein kinase domain profile. 317 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02632 Cca-Chr2 47482470 47485012 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02632 34 593 Receptor kinase-like Gene Family AT1G25390 41.920 9.22e-130 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Cca02g02632 PK_Tyr_Ser-Thr 1.5e-33 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02632 02 47482470 47485012 Cca02g02632 02 47482470 47485012 ECH