Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02623 ATGCTTCCTTTCGTTTTCCTTTTTTTTCTTCTATGCTGCAATTCTCTTGCACCTGTTGTGCATTCTCTGAATGCCGAAGGCTCTGTGCTTTTGACACTAAAACAGTCCCTCACAGACCCACAAGGCTCCATGAGTAACTGGAACTCTTCTGATGAGAACCCTTGTTCATGGAATGGGATCACTTGCAAGGACCAAACCGTTGTGTCCATTAGCATCCCAAAGAGGAAGCTCTATGGCTCTCTTCCCTCTTCTCTAGGATCTCTCTCCCAGCTCCGCCATGTCAACTTCAGGAGCAACAAGCTCTTTGGAAACTTGCCTGCACAGCTCTTTCAGGCTCAGGGACTGCAAAGTCTGGTGCTTTATGGTAATTCATTTTCTGGGTCGGTTCCAACTGAGATTCAGAACCTCAGGTACCTTCAAACTCTTGATTTATCACAAAATTTCTTCAATGGGTCATTGCCTGCTGCAATTGTCCAATGCAAGAGGCTCAAAACCCTTGTTCTCAGTCAGAACAATTTCACTGGCCCTTTGTCAGATAGGTTTGGTACTGGTCTGGTTTCTCTGGAAAGACTAGACCTTTCTTTCAATCAGTTCAATGGGTCAATTCCTAGTGATTTGGGAAACCTGTCGAGCCTGCAAGGAACTGTTGATTTGTCTCATAATCATTTTAGTGGTTCAATCCCAACTAGCCTTGGTAATCTGCCTGAGAAGGTTTACATTGATCTTACTTACAACAATTTAAGTGGTCCAATACCCCAAAATGGTGCTTTAATGAATAGAGGACCAACTGCTTTCATTGGCAATCCTGGTCTATGTGGTCCTCCTTTGAAGAACTCATGTGGTTCTGATACTCCATCTGCTACTTCACCTTCCTCATTTCCATTTATTCCTGATAACTACCCACCTCAGGGTGGTAATGTTTCCATTGGAGGTGAGAAAAGCAAAGGGTTAAGCAAGGGAGCTGTGGTTGGCATTGTTGTGGGTGATATAATTGGAATTTGTCTTTTAGGTTTGCTGTTCTCTTTTTGCTACTCAAGGGTATGTGGCTTTAACCAGGATCTGGATGAAAATGGTGTTAGCAAGGGAAGGAAAGGAAGTAAAGAGTGCTTCTGCTTCAGGAAAGATGAATCTGAGGCCCTATCTGATAACAATGTTGAGCAATATGATCTTGTCCCATTAGATTCCCATGTGACCTTTGATTTGGATGAGCTTCTCAAGGCTTCAGCTTTTGTTCTGGGTAAGAGTGGAATAGGGATTATGTACAAAGTGGTACTTGAAGATGGACTTGCTTTGGCTGTGAGAAGACTGGGGGAGGGAGGTTCTCAAAGGTTTAAAGAGTTCCAAACAGAAGTAGAAGCAATAGGGAAGTTAAGACATCCAAATATTGCAACTCTAAGAGCCTATTACTGGTCTGTTGACGAGAAGCTTCTCATATATGATTATATACCCAATGGAAGCCTTGATACAGCAATTCATGGGAAGGCCGGAATTGTCACATTCACACCACTATCTTGGTCCTATAGATTGAAGATCATGAAAGGAACTGCAAAAGGACTGGTCTATCTGCATGAATTTAGCCCCAAAAAATATGTCCATGGAGACCTCAAGCCAAGTAACATACTTCTTGGCCATAACATGGAACCTCACATTTCTGACTTTGGAGTTGGTCGCCTTGCAAACATCGCTGGAGGGTCCCCAACCTTGCAATCCAACCGAGTGGCTGTAGAGAAAGTACAGGGAAGACAAAAGAGCATGTCCTCTGAAGTCACAGCCAATGTTTTGGGAAACGGTTATCAGGCACCAGAAGCACTGAAAATGGTGAAGCCATCACAGAAGTGGGATGTTTATTCATATGGTGTGATATTGTTGGAAATGATTACAGGAAGATCATCCATTGTCCAAGTTGGTAACTCAGAAATGGACCTTGTTCAGTGGATTCAGTTCTGCATTGAGGAAAAGAAGCCACTCTTAGAGGTGTTGGACCCTTACTTGGCTGAAGATGCAGATAGGGAGGAGGAGATTATTGGGGTTTTGAAGATTGCGATGGCTTGTGTCCATAACAGCCCTGAAAAGAGACCTACAATGAGGCATGTTCTTGATGCTTTGGATAGATTGACCATTTCCTCTGATTGA 2133 0.4332 MLPFVFLFFLLCCNSLAPVVHSLNAEGSVLLTLKQSLTDPQGSMSNWNSSDENPCSWNGITCKDQTVVSISIPKRKLYGSLPSSLGSLSQLRHVNFRSNKLFGNLPAQLFQAQGLQSLVLYGNSFSGSVPTEIQNLRYLQTLDLSQNFFNGSLPAAIVQCKRLKTLVLSQNNFTGPLSDRFGTGLVSLERLDLSFNQFNGSIPSDLGNLSSLQGTVDLSHNHFSGSIPTSLGNLPEKVYIDLTYNNLSGPIPQNGALMNRGPTAFIGNPGLCGPPLKNSCGSDTPSATSPSSFPFIPDNYPPQGGNVSIGGEKSKGLSKGAVVGIVVGDIIGICLLGLLFSFCYSRVCGFNQDLDENGVSKGRKGSKECFCFRKDESEALSDNNVEQYDLVPLDSHVTFDLDELLKASAFVLGKSGIGIMYKVVLEDGLALAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNIATLRAYYWSVDEKLLIYDYIPNGSLDTAIHGKAGIVTFTPLSWSYRLKIMKGTAKGLVYLHEFSPKKYVHGDLKPSNILLGHNMEPHISDFGVGRLANIAGGSPTLQSNRVAVEKVQGRQKSMSSEVTANVLGNGYQAPEALKMVKPSQKWDVYSYGVILLEMITGRSSIVQVGNSEMDLVQWIQFCIEEKKPLLEVLDPYLAEDADREEEIIGVLKIAMACVHNSPEKRPTMRHVLDALDRLTISSD 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02623 710 ProSitePatterns Serine/Threonine protein kinases active-site signature. 530 542 IPR008271 GO:0004672|GO:0006468
Cca02g02623 710 SUPERFAMILY L domain-like 25 276 - -
Cca02g02623 710 Gene3D Ribonuclease Inhibitor 79 283 IPR032675 -
Cca02g02623 710 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 4 709 - -
Cca02g02623 710 Pfam Leucine rich repeat N-terminal domain 24 62 IPR013210 -
Cca02g02623 710 Gene3D Phosphorylase Kinase; domain 1 374 481 - -
Cca02g02623 710 Pfam Leucine Rich Repeat 187 209 IPR001611 GO:0005515
Cca02g02623 710 Gene3D Transferase(Phosphotransferase) domain 1 482 709 - -
Cca02g02623 710 SMART LRR_typ_2 185 209 IPR003591 -
Cca02g02623 710 SMART LRR_typ_2 88 112 IPR003591 -
Cca02g02623 710 SMART LRR_typ_2 136 160 IPR003591 -
Cca02g02623 710 Gene3D Ribonuclease Inhibitor 19 78 IPR032675 -
Cca02g02623 710 CDD STKc_IRAK 412 705 - -
Cca02g02623 710 SMART serkin_6 411 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02623 710 ProSiteProfiles Protein kinase domain profile. 406 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02623 710 SUPERFAMILY Protein kinase-like (PK-like) 411 702 IPR011009 -
Cca02g02623 710 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 4 709 - -
Cca02g02623 710 Pfam Protein kinase domain 412 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02623 Cca-Chr2 47384278 47386982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02623 1 710 Receptor kinase-like Gene Family AT2G01210 68.144 0.0 985
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Cca02g02623 Pkinase 1.8e-31 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02623 02 47384278 47386982 Cca02g02623 02 47384278 47386982 ECH