Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02622 ATGGAATCAAACACATCAAGCTTTCTTTTGAACTCTTCAACTTTGCACTCAGTTTTCTATCAAGACAAACAAGATGATGGCATAATTGATCTTGGTCTTAGTCTCGGAACTGTTCATCATGAAGCTTACCATTCTTCTGCCAACCTGTATGATGGTGACCTTATGGATTGGCCTCACTCTAATCTAAATATCAAGAATTCAAGCACAATGCATTCTAGATCTGTCCCCGAAAATTTTGATGAAGAGATAGAAGGGGTGCAGAGCAATGAAAGATGGGCTTATGTGAAGGTTAACATGGATGGGGTTACCATTGGTAGGAAAATTAGTGTACTTGATCATGGTGGATACTCAAGTCTAGCACTCCAATTAGAAGACATGTTTGGAAGCCAATCTGGTTCTGGATTACGATTGTTCCAATCTGAATCAGAGTACTCATTGTTCTACAAGGACAGACAAGATCATTGGAGGCCTGTCGGTGATGTACCATGGAAAGAGTTTATAGAATGTGTGAAGAGGTTGAGGATTGCAAGAAAGAATGATGGCATTGTTTCCTGTTCATCTAGATACACCTAA 573 0.3962 MESNTSSFLLNSSTLHSVFYQDKQDDGIIDLGLSLGTVHHEAYHSSANLYDGDLMDWPHSNLNIKNSSTMHSRSVPENFDEEIEGVQSNERWAYVKVNMDGVTIGRKISVLDHGGYSSLALQLEDMFGSQSGSGLRLFQSESEYSLFYKDRQDHWRPVGDVPWKEFIECVKRLRIARKNDGIVSCSSRYT 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02622 190 SUPERFAMILY CAD & PB1 domains 92 175 - -
Cca02g02622 190 Pfam AUX/IAA family 63 182 IPR033389 -
Cca02g02622 190 Gene3D - 86 187 - -
Cca02g02622 190 ProSiteProfiles PB1 domain profile. 92 180 IPR000270 GO:0005515
Cca02g02622 190 PANTHER AUXIN-RESPONSIVE PROTEIN IAA34 1 181 - -
Cca02g02622 190 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 181 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02622 Cca-Chr2 47378392 47379944 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02622 82 180 B3 DNA Binding Superfamily AT1G34410 32.323 6.47e-10 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Cca02g02622 AUX_IAA 1.1e-22 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02622 02 47378392 47379944 Cca02g02622 02 47378392 47379944 ECH