Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02620 ATGCCTAGTGGTGGCGAAGTTGAAGTGAAAAGGGTGTTCATTGGAGCGGGGTGCAACAGAATAGTGAACAACGTTTCATGGGGCGCTTCTGGTTTCGTCTCTTTTGGAGCTCACAACGCCGTTGCTATTTTCTGTCCCAAGAGTGCTCAAATTTTGACTACTCTTCCGGGTCACAAAGCAGTTGTGAATTGCACACACTGGCTCCCAACTTCCAAGTTCTTATTTAAAGCAAAACAATTGGAGCAGCATTATTTGCTATCTGGAGATGCAGATGGTGTCATTATTTTGTGGGAACTGTCCCTAACTGATGGGAAGTGGAGGCAAGTGTTGCAACTGCCACAATTACACAAGAAAGGTGTTACATGCATCAGTGGAATTATGGTTTCTCAAACTGAAGCAATGTTTGCTTCTTCTTCGTCAGATGGCTCTGTTTGTGTGTGGGAAGTTGTATTTCCCCTGACTGCTGGCGGTGACTGTAAATTATCAAGCCGGGATTCTTTCTCTGTTGGTTCCAAATCTATGGTAGCCCTATCATTAGCTGAATTACCTGGAGATAGTGGGCAAATTATCCTTGCGATGGGAGGATTGGATAACAAAATTCACCTTTATTGTGGTGGAAGGAAAGGAAAGCTTGCACATGCATGTGAGCTAAAAGGGCATACAGATTGGATACGGAGTTTGGACTTCTCATTACCTATAAGCATCAACGGGGAAGTAAACAATATTTTTCTGGTGAGTTCATCTCAGGATAAAGGCATACGAATATGGAAGATGGCATTGTGCAGCTCTGTGTCCAATGGACATGGCATATCCAGGAAAGGAGAAATAAGTTTATCATCCTATATAGAAGGTCCTGTACTTTTGGCTGGTTCATCTTCTTTTCAGATATCCTTAGAATCTCTTTTAATTGGACATGAAGATTGGGTATATTCAGTAATGTGGCAACCCCCTTTGGTTGCATCCAGGGAAGAGGATGCCTATTATCAACCACTAAGTATCTTATCTGCATCTATGGACAAGACTATGATGATCTGGCAACCTGAAAAGACTTCTGGTGTCTGGATGAATGTAGTCACTGTTGGGGAACTAAGCCACTGTGCTCTGGGGTTCTATGGTGGCCATTGGAGCCCAAATGGAGATTCAATTTTAGCACATGGGTATGGTGGATCTTTTCATCTTTGGAAAAATGTTGGTAATGATAATTGGCTGCCACAAAAGGTTCCCTCTGGTCATTTTGCGTCAGTGACTGATATTGCATGGGCTAGAACTGGTGATTATATTATGTCCGTCAGTCATGACCAGACAACTAGAATTTATGCTCCATGGAAAGTCGAGGCTTCTCTCGAAGACGGAGAATTTTGGCATGAAATAGCTCGTCCTCAAGTTCATGGTCATGATATAAATTGTATGGCAGTTATTCATAGTAAGGGGAATCATCGTTTTGTCGGTGGAGCTGATGAAAAAGTTGCCAGAGTGTTTGAAGCTCCATTATCTTTTCTGAAGACATTAAATAATGCCACCTTGCAGAAGTCTTGTTCTTCTGATGATGTCATGGGAGATGTTCAGATTTTGGGTGCAAATATGTCAGCTCTTGGACTATCACAGAAACCTATTTATGTTCAAGCTGTACATGAGGCCCCTGAAAGAAGTGGGATTGATGGTATTGACACCCTTGAAACTATTCCTGATGCCGTTCCAACTGTGTTCACTGAACCTCCAATTGAAGATCAACTGGCTTGGCATACACTTTGGCCTGAATCGCACAAACTCTATGGTCATGGAAATGAACTATTCGCTTTATGCTGTGATCATAAGGGAGAGCTTGTTGCTTCTTCCTGCAAGGCCCAATCTGCAGCTGTTGCAGAGGTGTGGCTTTGGCAGGTGGGTTCATGGAAAGCGGTTGGCCGCTTGCAATCCCACAGCTTAACAGTGACACAGATGGAGTTCTCACATGATGACAACTTTCTTTTGACTGTCTCAAGGGATCGCCAGTTCTCCGTTTTTTCGATCACAAAAACAGGCACTGGTGAAATTAGTCATAGTCTTCTTGCAAGGCAAGAGGGGCACAAGCGGATTATCTGGTCATGTTCTTGGAATCCACACGGTAACGAATTTGCAACAGGTTCGCGGGATAAGACAGTAAAAATTTGGGCCATAGAGAGGGAGTCATCCGTCAGGCTGCTTACGACTTTACCTCAATTTATGAGTAGTGTGACAGCACTATCTTGGATTGGTCTCCATCATCAGAAAAATTATGGACTTCTAGCTGTTGGAATGGAAAATGGCCAAATAGAAATGTGGAATCTGTCTTATAACAGAGCAGATAATGGGAGCATAGCTACACCAGGTTTGGCTGCTTCTCTTGCTGTACGTATAGATCCTTTTATATGCCATGCCTCTACTGTAAACCGTCTAGCATGGAAGAAAAATGAGGATGATCACACAAGTATGCAACTGGCTTCTTGTGGAGCTGATAATTGTGTAAGAGTTTTTGATGTAACTGTTAAGTAA 2511 0.4293 MPSGGEVEVKRVFIGAGCNRIVNNVSWGASGFVSFGAHNAVAIFCPKSAQILTTLPGHKAVVNCTHWLPTSKFLFKAKQLEQHYLLSGDADGVIILWELSLTDGKWRQVLQLPQLHKKGVTCISGIMVSQTEAMFASSSSDGSVCVWEVVFPLTAGGDCKLSSRDSFSVGSKSMVALSLAELPGDSGQIILAMGGLDNKIHLYCGGRKGKLAHACELKGHTDWIRSLDFSLPISINGEVNNIFLVSSSQDKGIRIWKMALCSSVSNGHGISRKGEISLSSYIEGPVLLAGSSSFQISLESLLIGHEDWVYSVMWQPPLVASREEDAYYQPLSILSASMDKTMMIWQPEKTSGVWMNVVTVGELSHCALGFYGGHWSPNGDSILAHGYGGSFHLWKNVGNDNWLPQKVPSGHFASVTDIAWARTGDYIMSVSHDQTTRIYAPWKVEASLEDGEFWHEIARPQVHGHDINCMAVIHSKGNHRFVGGADEKVARVFEAPLSFLKTLNNATLQKSCSSDDVMGDVQILGANMSALGLSQKPIYVQAVHEAPERSGIDGIDTLETIPDAVPTVFTEPPIEDQLAWHTLWPESHKLYGHGNELFALCCDHKGELVASSCKAQSAAVAEVWLWQVGSWKAVGRLQSHSLTVTQMEFSHDDNFLLTVSRDRQFSVFSITKTGTGEISHSLLARQEGHKRIIWSCSWNPHGNEFATGSRDKTVKIWAIERESSVRLLTTLPQFMSSVTALSWIGLHHQKNYGLLAVGMENGQIEMWNLSYNRADNGSIATPGLAASLAVRIDPFICHASTVNRLAWKKNEDDHTSMQLASCGADNCVRVFDVTVK 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02620 836 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 301 834 IPR011047 -
Cca02g02620 836 Gene3D - 170 286 IPR015943 GO:0005515
Cca02g02620 836 ProSiteProfiles Trp-Asp (WD) repeats profile. 408 439 IPR001680 GO:0005515
Cca02g02620 836 PANTHER ELONGATOR COMPLEX PROTEIN 2 4 835 - -
Cca02g02620 836 SMART WD40_4 401 440 IPR001680 GO:0005515
Cca02g02620 836 SMART WD40_4 295 346 IPR001680 GO:0005515
Cca02g02620 836 SMART WD40_4 630 669 IPR001680 GO:0005515
Cca02g02620 836 SMART WD40_4 356 395 IPR001680 GO:0005515
Cca02g02620 836 SMART WD40_4 105 148 IPR001680 GO:0005515
Cca02g02620 836 SMART WD40_4 210 257 IPR001680 GO:0005515
Cca02g02620 836 SMART WD40_4 450 494 IPR001680 GO:0005515
Cca02g02620 836 SMART WD40_4 788 832 IPR001680 GO:0005515
Cca02g02620 836 SMART WD40_4 724 768 IPR001680 GO:0005515
Cca02g02620 836 SMART WD40_4 48 98 IPR001680 GO:0005515
Cca02g02620 836 SMART WD40_4 679 718 IPR001680 GO:0005515
Cca02g02620 836 SMART WD40_4 583 627 IPR001680 GO:0005515
Cca02g02620 836 Pfam WD domain, G-beta repeat 50 97 IPR001680 GO:0005515
Cca02g02620 836 Pfam WD domain, G-beta repeat 216 257 IPR001680 GO:0005515
Cca02g02620 836 Pfam WD domain, G-beta repeat 404 439 IPR001680 GO:0005515
Cca02g02620 836 Pfam WD domain, G-beta repeat 687 717 IPR001680 GO:0005515
Cca02g02620 836 Pfam WD domain, G-beta repeat 116 147 IPR001680 GO:0005515
Cca02g02620 836 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 686 720 - -
Cca02g02620 836 ProSiteProfiles Trp-Asp (WD) repeats profile. 637 670 IPR001680 GO:0005515
Cca02g02620 836 Gene3D - 1 169 IPR015943 GO:0005515
Cca02g02620 836 ProSiteProfiles Trp-Asp (WD) repeats profile. 686 727 IPR001680 GO:0005515
Cca02g02620 836 Gene3D - 679 836 IPR015943 GO:0005515
Cca02g02620 836 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Cca02g02620 836 PRINTS G protein beta WD-40 repeat signature 333 347 IPR020472 -
Cca02g02620 836 PRINTS G protein beta WD-40 repeat signature 705 719 IPR020472 -
Cca02g02620 836 SUPERFAMILY WD40 repeat-like 18 439 IPR036322 GO:0005515
Cca02g02620 836 PANTHER WD REPEAT-CONTAINING 4 835 - -
Cca02g02620 836 Gene3D - 406 516 IPR015943 GO:0005515
Cca02g02620 836 ProSiteProfiles Trp-Asp (WD) repeats profile. 217 258 IPR001680 GO:0005515
Cca02g02620 836 Gene3D - 574 678 IPR015943 GO:0005515
Cca02g02620 836 Gene3D - 287 405 IPR015943 GO:0005515
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02620 02 47362665 47367797 Cca02g02620 02 47362665 47367797 ECH