Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02618 ATGGAGGCCCAACCTCCAAccccctccaccgcgcctccgccgccgccgcagcACCTCAACTACCCCGACTCCGTCGAGTCCTCCCCACGCTCCCGTAACACCGATTCCTGGGATGAGCCCTTCGCGCCGGCGTCGTCGAAGCTCCGCCTCATGTGCAGCTACGGAGGCCACATAGTGCCGCGGCCCCACGACAAGTCCCTCTGCTACGTGGGCGGCGACACGCGCATCATCGTGGCCGAACGCGCCACCTCACTCGCGGAGCTCTCCACGCGCCTCTCCAAGACCTTCCTCAATGGACGTCCCTTCACGCTCAAGTACCAGCTCCCCAACGAGGACCTGGACTCCCTCATCTCCGTCACCACCGACGAAGACCTTGAAAACATGATCGACGAGTACGACCGCACCGCCGCCGCCGCCGTCAAACCCTCCCGCATCCGCCTCTTCCTCTTCCCCACTAAACCCGATTCCACTCACTCCATCCCTCCCCAAATCCTCGACACTTCAGCAAAATCCGAAGATTGGTTCCTCAATGCCCTAAACGGCGCCGGATTGCTCAACCGAGGCTTTTCCGATTCCGCTTCCGTTAATTGCCTCCTCGGCCTCGACGATGAAGTTGCCGCGAATGCTCTCGAACAGGGTTCCAGGGACGTCGGGGATGGAGGCAGCGGCGCCGCCGCCGCCGCTTCCCAAGGTGGATCCTTCGGAAACGGGAAGAATTTGAAGCAGGATGTTCACTCCGTTCCCGATTCGCCCATGCTGGAGAcgacgtcgtcgttcgggtccacttcgtcgtcgccgtcgCTGGCGAATTTGCCGCCGATTAGGGTTCACGCCGTGGAGGATCAGAAGGTGATGGGGATTGAGGAGCAGTTCGCTCAGATGGGGGTTGGAGTGGGGCAGAAGCAGGATGAGGGTTTTGTTTTGCTGTCTTCGCCGCCGCCTCCACCTGTACCGGCCACGCTCGCCGCCGTGGGGGTTCCGCTTGCGGCGGGGGCGGTGGTCGCCGGGGAGTATCATAATCGGGTCATCTCCGATGATGAGAGATCCGATCACGGGGTTCCGGTTGGGTATAGGAAACCGCCCACTCCTCAGCCACAGGCTCAGACACAACAATTACAGACACAATCACAAACACTTGCGCCTCAATTTCAACAGAAGTCAACTGGTGGTGGCGGCGTTGCTGATTTGCCTTCTCCCGAttcagtttcaagTGATAGTAGTCTTGCAAATGCAATTTCGCGTCAGAAACCTGCTGTTTATCAAGATCAAGTTCAGATTCAATCAGGGACTACAAGGGTTCCTAGTAACCCTGTGGATCCGAAGCTTAATGTGTCTGATTCGCATGGTCGGATTCAGATGCAGCAGCATGTACAGGACCCTGGATATTTGTTGCAGCAACAATTTGAAcagcaccagcagccactgccgcaacagcaatttgaacagctccatcatcagcagcaacaacaaccgcaacaacagcagcagTTTATACATGGCACACACTTCATTCACCATAACCCTGGAATTTCTGCGTACTATCCTGTATATCCTTCTCAGCAACATCCCCAGCATCAGCAGGTTTACTATGTGCCTGCTAGACAGGCTCAGGCTTACAACTTGCCTGTGCAGCAGGCTAATATTGGTGAGTCCACGGGGAACATCCCTTCTAACCGGCCACAAACTCCGCCGAATCCTGCTACATTGGTTCCACAACCCGGTGCTTACAATCCTATGAGAAATGCTCCCATGCCTAAAACTGAAATGAGTGCTTACAGAGCTGCAACTGCAGGCACCCCACAACTAGTTCAAGTTCCTACAAGCCAGCATCAGCAACAGTATGTCACTTACTCACAGATTCATCATCCATCTCAGTCCATGGCTCCCAATTCTGCTGCCCCTGCCAATTATGCTTTCGATTATGCGGATCCTGCTCATGCTCAAATATACTATTCTCAACCTCTGGCACCCACAATGCCCTCACAGTACCAGACTATGACAGCCGCTGCTGTGATGATGCAGGATGGTTCAGCCCAGCATCCCTCAGACAGTGTGAAGCAGCAGATAAGAACCTCACAGCCATTATAA 2088 0.5062 MEAQPPTPSTAPPPPPQHLNYPDSVESSPRSRNTDSWDEPFAPASSKLRLMCSYGGHIVPRPHDKSLCYVGGDTRIIVAERATSLAELSTRLSKTFLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTAAAAVKPSRIRLFLFPTKPDSTHSIPPQILDTSAKSEDWFLNALNGAGLLNRGFSDSASVNCLLGLDDEVAANALEQGSRDVGDGGSGAAAAASQGGSFGNGKNLKQDVHSVPDSPMLETTSSFGSTSSSPSLANLPPIRVHAVEDQKVMGIEEQFAQMGVGVGQKQDEGFVLLSSPPPPPVPATLAAVGVPLAAGAVVAGEYHNRVISDDERSDHGVPVGYRKPPTPQPQAQTQQLQTQSQTLAPQFQQKSTGGGGVADLPSPDSVSSDSSLANAISRQKPAVYQDQVQIQSGTTRVPSNPVDPKLNVSDSHGRIQMQQHVQDPGYLLQQQFEQHQQPLPQQQFEQLHHQQQQQPQQQQQFIHGTHFIHHNPGISAYYPVYPSQQHPQHQQVYYVPARQAQAYNLPVQQANIGESTGNIPSNRPQTPPNPATLVPQPGAYNPMRNAPMPKTEMSAYRAATAGTPQLVQVPTSQHQQQYVTYSQIHHPSQSMAPNSAAPANYAFDYADPAHAQIYYSQPLAPTMPSQYQTMTAAAVMMQDGSAQHPSDSVKQQIRTSQPL 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02618 695 MobiDBLite consensus disorder prediction 249 270 - -
Cca02g02618 695 MobiDBLite consensus disorder prediction 1 40 - -
Cca02g02618 695 PANTHER EXPRESSED PROTEIN 9 686 - -
Cca02g02618 695 SMART PB1_new 62 152 IPR000270 GO:0005515
Cca02g02618 695 MobiDBLite consensus disorder prediction 1 20 - -
Cca02g02618 695 MobiDBLite consensus disorder prediction 399 445 - -
Cca02g02618 695 MobiDBLite consensus disorder prediction 21 40 - -
Cca02g02618 695 MobiDBLite consensus disorder prediction 362 391 - -
Cca02g02618 695 Gene3D - 67 151 - -
Cca02g02618 695 MobiDBLite consensus disorder prediction 341 445 - -
Cca02g02618 695 PANTHER OS05G0427100 PROTEIN-RELATED 9 686 - -
Cca02g02618 695 SUPERFAMILY CAD & PB1 domains 63 160 - -
Cca02g02618 695 ProSiteProfiles PB1 domain profile. 47 152 IPR000270 GO:0005515
Cca02g02618 695 MobiDBLite consensus disorder prediction 471 496 - -
Cca02g02618 695 CDD PB1_UP2 51 150 - -
Cca02g02618 695 MobiDBLite consensus disorder prediction 213 272 - -
Cca02g02618 695 MobiDBLite consensus disorder prediction 674 695 - -
Cca02g02618 695 Pfam PB1 domain 63 151 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02618 Cca-Chr2 47357509 47359780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02618 44 216 MAP Kinase Kinase Kinase AT1G79570 35.227 1.51e-24 107
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02618 02 47357509 47359780 Cca02g02618 02 47357509 47359780 ECH
Cca02g02618 02 47357509 47359780 Cca08g00267 08 3751486 3754509 ECH