Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02607 ATGCATAATAAGGACGCTTGCTCCCCCTCCGCCAACGGCGGATTCGGCGCCGTCACCGCCGGTCAAATTTCGTCACCCGGCGGCGTCTACAGCTCACTGTACTCGGCCTTGTCGAACGACAGCATTGCGTCACTCTCCGCGAACGGCGGTGGCGTTTCGCTGTATCCGTACTCCGAGTCAACTCAGTACGACTCGGGCGTGATTCAGAAGCACCAGGACATGGTGAACCGTCACAGCATGTGCCTGAGTCGCCTCGTGGAGACTTCGAAAGAGGTGGAGGCTCTGCGGCAAGAGAACGGCCAGCTCCGCGCGGCGAACAAGGAGCTGCAGAAGCAGCTGCACCTCGTCATCCAGGCCTCGCTGGAGAACCACTTCCGCGGCCTGCACATTGGAGAGGGTAAAGAGAACTGCGCCGATTGGaataacaacaataacaatattaataatagtcataacaacatgaatagtaatGGCAACAAGGAGCTGCAGGAAATTTCAGACGAGAGTCCAACGAGCGTTATTGAGAATAACGTGGTGGAAGTGGAGAGGTTCTCTCTCCCTAAGAGCATATCTGTGAGGTCCAATGGCTACTTGAAGATGGCTCAGTCTGCGGCTCTAGCCGCCAACAATAACGCCTCTCGCAACAAAGGTGCCACTCGTCCACGCACCTCCGCCACTCCACCTGAAGCCGTTCAAAAGGTATATGTGCGTGGAGGGCAGAAAGAGGAAGAGCCTCTTGAAATGGTAGTGTATAACCAAGGGATGTTCAAGACTGAGCTGTGCAATAAGTGGCAAGAAACTGGCACATGCCCATATGGAGACCACTGCCAATTTGCTCACGGTATTGGGGAGCTTCGCCCAGTCATCCGCCACCCACGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGGGTTGTCTGCCCTTATGGCCATAGATGCCATTTCCGCCATGCACTTACTGAGCAAGAGAAAGCTGTCGTATCACAGCCTAAGCCCAGAACAATGAAGCTCGAAAGATAG 1023 0.5279 MHNKDACSPSANGGFGAVTAGQISSPGGVYSSLYSALSNDSIASLSANGGGVSLYPYSESTQYDSGVIQKHQDMVNRHSMCLSRLVETSKEVEALRQENGQLRAANKELQKQLHLVIQASLENHFRGLHIGEGKENCADWNNNNNNINNSHNNMNSNGNKELQEISDESPTSVIENNVVEVERFSLPKSISVRSNGYLKMAQSAALAANNNASRNKGATRPRTSATPPEAVQKVYVRGGQKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAVVSQPKPRTMKLER 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02607 340 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 256 281 IPR000571 GO:0046872
Cca02g02607 340 Gene3D - 250 288 - -
Cca02g02607 340 Gene3D - 289 325 - -
Cca02g02607 340 ProSiteProfiles Zinc finger C3H1-type profile. 293 321 IPR000571 GO:0046872
Cca02g02607 340 SMART c3hfinal6 293 320 IPR000571 GO:0046872
Cca02g02607 340 SMART c3hfinal6 255 282 IPR000571 GO:0046872
Cca02g02607 340 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 46 330 - -
Cca02g02607 340 SUPERFAMILY CCCH zinc finger 289 323 IPR036855 GO:0046872
Cca02g02607 340 ProSiteProfiles Zinc finger C3H1-type profile. 255 283 IPR000571 GO:0046872
Cca02g02607 340 SUPERFAMILY CCCH zinc finger 252 287 IPR036855 GO:0046872
Cca02g02607 340 Coils Coil 85 112 - -
Cca02g02607 340 PANTHER CCCH ZINC FINGER/TIS11-RELATED 46 330 IPR045877 GO:0003729
Cca02g02607 340 Coils Coil 339 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02607 Cca-Chr2 47248707 47251094 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02607 67 335 C3H Transcription Factor Family AT1G68200 52.941 1.11e-87 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca02g02607 zf-CCCH 2.7e-12 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02607 02 47248707 47251094 Cca02g02607 02 47248707 47251094 ECH