Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02600 ATGCTCTCCATTCCGCAACCCTCGTGCATTCCCAAAACCCTAAAACCTTCCATTCCCTTTCCGCTTCCGCCCATGAAGGACCGCCGCACGCTGTCCTCCAATGGCTCCATCTACATTCCGCCGCACCACCGTCTCCGCTCCGTCGCCAATTGCAACAACTCTCCCTCTCCGCTTCGCGCCAAACTCCACGAAAACCCTACACACGCCGCCACTACTCTGCAACCGCAGCTTCCCCAAAACGCGCGTTCGCGCTTCGTCTCTGCTTATGACGACACCGTTTCCGAGGAAGGCTCCGATCGTGAATTTGAACCTCCATCACTACCGAATGCTTCCCCTAATGATAACACTGATGAGTGGAAGCGGAACTTCACCACGCTTTTAAATGACAAGAGCAGGCATGAGTTGATCTCGAGAGAGAAAAAGGATAGGCGTGATTTTGAACGAATAGCAGTTTTGGCAAGCAGAATGGGGTTGTATAGCCATATGTATGCTAAGGTTGTTGTCTTCAGTAAGGTCCCACTTCCAAATTACAGATATGATTTGGACGATCGGCGGCCTCAGAGGGAGGTGAGCTTGTCTATCGCCACATTTACACGAGTTAATGCACACTTTGAGGAATATCTTAGCCAAAAATCCAGGGCGAACAAAAGCTTTTCAGATTTGTCATCTGCAAGATCAAGCAGTAATGGCAGTATTGCTACGGATGAAGGACTTTTTGAGCAATCTGAGCCACTAGCATCAAATAAGGCTGTTATGGAGAAAATTCTATGTCAGAGAAGCTTACAAATGCTTGATCAGCAGCAAGCATGGCAGGAATCTCTTGAAGGAAGAACAATGCTAGAATTTCGTAGAAGTCTCCCTGCTTATAAAAAGAAAGAAGCAATATTATCAGTCATATCAAGGAATCAGGTAGTTATCATTTCAGGTGAAACAGGTTGTGGCAAGACAACACAAATTCCACAATTTATTTTAGAATCTGAGATAGAATCAGTTCGTGGAGCTGCTTGTAGTATTATATGCACACAGCCAAGACGCATTTCAGCCATGTCTGTTTCTGAAAGGGTTGCTTTTGAGAGAGGGGAGAAATTGGGCGAATCTGTTGGATATAAAGTTCGGCTTGAGGGTATGAAAGGGAGGGATACCCATCTCCTCTTTTGCACCACAGGCATCTTATTAAGAAGATTACTAGTTGATAGAAAGTTAAAAGGTGTAACTCATGTAATTGCGGATGAAATTCATGAGCGAGGGATGAATGAAGATTTTCTGCTTATTATCCTTAAAGAACTCCTTCCCCATCGACCAGAACTGAAACTAATTTTGATGAGTGCTACGGTAGATGCAGAGCTCTTTTCTTCGTACTTTAATGGGGCTCCAGCTATGTATATTCCGGGCTTCACATACCCCGTTAAAACTCATTTTTTGGAGAACATTCTTGAAATGACGGGCTACAGATTGACTCCTTACAATCAAATTGATGATTATGGTCAAGAAAGGATGTGGAAAATGAACAAACAGGCCCCAAGAAAGAGGAAAAGCCAAATTGCTTCCGCTGTAGAGGATGCAATTGGAGCTGCTGATTTCAAAGATTACAGCCCACAGACACAGGAGTCTTTGTCATGTTGGAATCCTGACTGTATTGGTTTTAGTCTCATAGAATATATTTTATGCAATATATGTGAGAATGAAAGGCCTGGTGCTGTTTTGGTTTTCATGACTGGATGGGATGATATAAGCTCTCTGAAAGAGAAGCTCCTGGGACATACTGTTTTGGGTGATCCAAACCGTGTTTTGTTGCTTACTTGTCATGGCTCAATGGCTAGTTCAGAGCAGAAATTAATATTTGAAGAGCCTGAAGATGGAGTAAGAAAAATAGTGCTAGCAACAAATATTGCTGAAACAAGTATCACAATAAATGATGTTGTTTTTGTTCTTGACTGTGGAAAGGCAAAAGAAACATCATATGATGCACTGAATAACACGCCTTGTTTACTTCCTACATGGATCTCTAAGGTTTCTGCTCAACAAAGAAGAGGAAGAGCTGGTCGGGTTCAACCAGGAGAGTGTTACCATCTCTATCCTAGATGTGTATATGATGCTTTTGCAGAGTATCAGTTGCCAGAAATTTTGAGAACACCTTTGCAATCTCTCTGTTTACAAATCAAAAGTCTAAGACTTGGAAGTATATCTGAGTTCTTGTCTAGGGCTTTGCAATCTCCTGAGATACTTGCGGTACAAAATGCAATTGAATATTTAAAAATAATTGGGGCTTTGGATGGGAATGAGAATCTCACTATTCTAGGGCACTATCTGACAATGCTTCCTATGGAACCCAAACTTGGCAAGATGCTAATATTAGGTGCTATTTTCAATTGCCTGGATCCCATATTAACTGTTGTTGCGGGGCTTAGTGTGAGAGATCCTTTTCTAACACCATTGGATAAAAAAGATCTTGCAGAGGCAGCAAAATCTCAATTCTGTGGTGCATACAGTGACCACCTTGCACTTGTAAGAGCATACGAAGGTTGGAAAGATGCTGAAATGGACCTTGGTGGGTATGAATACTGCTGGAAAAATTTTCTCTCCTTACAATCTATGAAAGCTATTGATGCTCTTCGGAGGGAGTTCATTTGCCTGCTCAAGGATACAGGATTAGTTGATAGCAATACAGCCAGCTGCAATGGATGGAGCTCTGATGTAAATCTTATCCGAGCAGTTATTTGCTATGGTCTATATCCTGGAATTTGTTCTGTTGTGCATAATGAGAAATCCTTCTCTTTGAAAACAATGGAGGATGGTCAAGTGCTCCTATACTCGAACTCAGTGAATGCCCGGGAAACTAAAATTCCTTATCCATGGCTAGTTTTCAATGAGAAGATAAAAGTGAACTCAGTTTTTCTCCGTGACTCAACAGCTGTATCTGATTCAATGGTGCTTCTGTTTGGTGGAAGCTTATTGAAAGGAGATGCTGATAATCACTTAAAAATGTTAGGAGGATATCTTGAGTTTTTCATGGAGCCCACTGTTGCTGAAATGTACCAGAGTATAAGGAGAGAGCTTGATAACTTCATTCAGAGCAAACTACTTTTTCCAAGAATGGGCATACACTGGTATCATGATCTCCTGTCTGCAGTACGGCTGCTGATTTCGAATGACAAATCTGAAGGTAGATTTGTATTTGGTCGCCGGGTCATTAAACCATCAAAGAAATCTATTATGCTGGCCTCACATCCACCCTTGGTTTCAAGGAATGAGAGTGGACCTGGGGGTGATAATTCTAAAAGTCAGCTCCAAACCTTGCTTACGAGAGCAGGCTATGCAGCACCCATGTACAAAACTAAACAATTGAAGAACAATCAGTTTCAGGCTACAGTCGAATTCAATGGAATGCAGATAATGGGTCAACCATGTAACAATAAAAAGAGTGCAGAAAAAGATGCTGCAGGTGAGGCGCTGCAATGGCTGATGGGTGGAAAGCAATCAGGCAGGGAGTATATCAATCACGTGTCAATGTTACTTAAGAAAAGTAAGAAAGATCACAATTAA 3543 0.4203 MLSIPQPSCIPKTLKPSIPFPLPPMKDRRTLSSNGSIYIPPHHRLRSVANCNNSPSPLRAKLHENPTHAATTLQPQLPQNARSRFVSAYDDTVSEEGSDREFEPPSLPNASPNDNTDEWKRNFTTLLNDKSRHELISREKKDRRDFERIAVLASRMGLYSHMYAKVVVFSKVPLPNYRYDLDDRRPQREVSLSIATFTRVNAHFEEYLSQKSRANKSFSDLSSARSSSNGSIATDEGLFEQSEPLASNKAVMEKILCQRSLQMLDQQQAWQESLEGRTMLEFRRSLPAYKKKEAILSVISRNQVVIISGETGCGKTTQIPQFILESEIESVRGAACSIICTQPRRISAMSVSERVAFERGEKLGESVGYKVRLEGMKGRDTHLLFCTTGILLRRLLVDRKLKGVTHVIADEIHERGMNEDFLLIILKELLPHRPELKLILMSATVDAELFSSYFNGAPAMYIPGFTYPVKTHFLENILEMTGYRLTPYNQIDDYGQERMWKMNKQAPRKRKSQIASAVEDAIGAADFKDYSPQTQESLSCWNPDCIGFSLIEYILCNICENERPGAVLVFMTGWDDISSLKEKLLGHTVLGDPNRVLLLTCHGSMASSEQKLIFEEPEDGVRKIVLATNIAETSITINDVVFVLDCGKAKETSYDALNNTPCLLPTWISKVSAQQRRGRAGRVQPGECYHLYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLRLGSISEFLSRALQSPEILAVQNAIEYLKIIGALDGNENLTILGHYLTMLPMEPKLGKMLILGAIFNCLDPILTVVAGLSVRDPFLTPLDKKDLAEAAKSQFCGAYSDHLALVRAYEGWKDAEMDLGGYEYCWKNFLSLQSMKAIDALRREFICLLKDTGLVDSNTASCNGWSSDVNLIRAVICYGLYPGICSVVHNEKSFSLKTMEDGQVLLYSNSVNARETKIPYPWLVFNEKIKVNSVFLRDSTAVSDSMVLLFGGSLLKGDADNHLKMLGGYLEFFMEPTVAEMYQSIRRELDNFIQSKLLFPRMGIHWYHDLLSAVRLLISNDKSEGRFVFGRRVIKPSKKSIMLASHPPLVSRNESGPGGDNSKSQLQTLLTRAGYAAPMYKTKQLKNNQFQATVEFNGMQIMGQPCNNKKSAEKDAAGEALQWLMGGKQSGREYINHVSMLLKKSKKDHN 1180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02600 1180 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 902 983 IPR011709 -
Cca02g02600 1180 SMART ultradead3 283 472 IPR014001 -
Cca02g02600 1180 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 293 876 IPR027417 -
Cca02g02600 1180 Pfam DEAD/DEAH box helicase 294 446 IPR011545 GO:0003676|GO:0005524
Cca02g02600 1180 Gene3D - 549 703 IPR027417 -
Cca02g02600 1180 CDD DEXHc_RHA-like 302 462 - -
Cca02g02600 1180 SUPERFAMILY dsRNA-binding domain-like 1087 1163 - -
Cca02g02600 1180 SMART DRBM_3 1092 1155 IPR014720 -
Cca02g02600 1180 Gene3D - 726 828 - -
Cca02g02600 1180 SMART ha2_5 746 836 IPR007502 GO:0004386
Cca02g02600 1180 Gene3D - 1074 1159 - -
Cca02g02600 1180 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 296 463 IPR014001 -
Cca02g02600 1180 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 73 1101 - -
Cca02g02600 1180 Pfam Helicase associated domain (HA2) 747 820 IPR007502 GO:0004386
Cca02g02600 1180 MobiDBLite consensus disorder prediction 90 118 - -
Cca02g02600 1180 PANTHER ATP-DEPENDENT RNA HELICASE 73 1101 - -
Cca02g02600 1180 Pfam Double-stranded RNA binding motif 1092 1154 IPR014720 -
Cca02g02600 1180 Gene3D - 240 464 IPR027417 -
Cca02g02600 1180 SMART helicmild6 575 684 IPR001650 -
Cca02g02600 1180 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1091 1156 IPR014720 -
Cca02g02600 1180 Pfam Helicase conserved C-terminal domain 552 683 IPR001650 -
Cca02g02600 1180 CDD SF2_C_RHA 530 692 - -
Cca02g02600 1180 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 550 724 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02600 Cca-Chr2 47149580 47164878 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02600 02 47149580 47164878 Cca02g02600 02 47149580 47164878 ECH