Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02594 ATGGAAAAGAGTCTCTTAGAGAAGGAGGGTGCTTCACCCACAATAACATGGAGTTGTATCGTTCAAGAGATGAAAAGTGTCGGTTATATAGCAGGTCCTATGATTGCTGTCACTTTGTCACAGTATTTTCTGCAAATAATAGCAATGATGATGGTTGGTCACTTGGGCAAGCTTGCTCTCTCTAGCACTGCCATTGCCATCTCTCTCTGTGCTGTCACTGGTTTCAGTCCTATTtttggaatgtcatgtgcactagaaactcaatgtgggcaagcatatggagcacagcaatatcgaaaattcggTGTTCAAATTTACACTGGTATTGTTTCTCTTACTTTAGCTTGTCTTCCTCTAACTCTTTTGTGGATCTACTTGGGGAAGATACTCGCTTTACTTGGCCAAGACCCTTTGATTTCTCAAGAAGCTGGAAACTTTGCCTTGAGCATGATCCCTGCTCTATTTGCTTATGCAACACTTCAGTCCTTGGTTCGATATTTTCTTATGCAAAGTTTGATCAGTCCCCTTGTCATTAGTTCTGCCATTACTCTATGCTTCCATGTAGCTTTCTGTTGGCTACTAGTTTTTAAGTCTGAATTGGGCAACTCCGGAGCAGCATTTTCTATTGGAACTTCATACTGGCTGAATGTGATTTTACTCGGATTATATATGAAATTCTCTCTTCAGTGTGAAACAACTCGTGTCCCAATTACAATGGAACTATTCCATGGGATGGGAGAGTTCTTCCGCTATGCTATTCCTTCAGCAGGTTGCCTTGAATGGTGGTCATTTGAGCTGCTAACCTTGCTTTCTGGCCTTCTACCAAATCCAGAGCTTGAAACTTCTGTCTTATCCATATGTTTATCAATCATGACAACAATCTACACAATCCCAGAATCAATTGGTTCAGCGGCAAGCGCTAGAGTTTCAAATGCATTAGGAGCTGGAAATCCACAAGCAGCACGAGTGTCTGTTTCTGCTGCTATGGCTCTTGCAGCTTTGGAGGCCATTCTGGTGAGCTCAATCATTTTTTCCTGTAGGGAGGTTTTAGGCTATGTATTTAGCACTGAGCAGGACGTGGTGGATTATGTTACAGATATGGTTCCTCTTTTAAGTCTTTCTGTTATACTGGACACCTTACATGGTACTCTTTCAGgtattgctagaggatgtggatggcagcacataggaacatatgtaaaccttggagcttattatgttttgggaattccaattgctgttatACTGGGTTTCTGGGTAAAATTAAGGGGAAAAGGGTTGTGGATTGGAATACTAGTTGGTGCCTTCAGCCAAACAGTTATGCTATCTTGCATAACAAGTTGTACAAACTGGGAAAAACAGGCAATTAAAGCAAGGGAAAGTTACCGAACCCAAGATACGAACGCCGTCACTCCGGTTGTGGTTGTGTTGAGGACGATGGCTGTAAGAGCCAAGAAAGAGAAAGAGCGCCTCAATCTAATCTTAGGTTCCTACCTCACCACTATCCATGAAACCCTCCAGGTTTTGGATCAAACGCCACCTTCTTCTTCCTCCGCCAAAGTCACCTGGGACGATGTCATCAAGATGGCTGACCAAGTCTCTAAACAAGCAACCACAGTGGGAATGCTTTGGAGTGGAGACAAGCCAGAACCCAAAGCAATTGAGGAAAATATGGCAGCGTACTTCAACAATCTACAAGGTTTCCTTTTGCTTTCCCATGCCAGTCTGGTAGCTGCAGGGCCTACCTTGTCTTCCACTGTTCATTCATCTGTCAAACAAGTCGTTGATTCCAGCTTCAGGATGATGAAGGAAACTGTCTCCTTATATGGGTCCCATTGTAAAGACCAGAAACTATCAGTACCGCAATTGGTTGGTGCTGTATGGGAAGCATGTTCTGCCCTTAAGAAGACTCCTTCAACAAATATTACAGCAATTGGGCGAGGAATGACACAGGTTGCTGTTTCAGTGAAAGATGTTCTTCGTGAGATGAAAGAATTGAAGCCTGATTCATGTGATGATCAAGTTGACAAAGCTGCTGGTGAGAGTTGTGCAGAAGCAGTGTCTGAGCCACATGATGATAATTCAAGTGAAGGTGATATAGGGAATGACCTGTCGCCTGAAGAGATGAAAGTGGCTGAAAGAGCAATTGTGGTTGTCTCTGATACGCTTTCAGTTATAAAAGTACTTATTCACTCCATCATAGGCTTGCTTAAGCTGGAAAAACCTAATGACAACAGCAGTTTTGTAAATTCGCTGGAAAAGTTGTTGCAATTGTGTCAGGAACTTGGCCGGCAGATTGATGAGATTGGAGCTTGCCTTTATCCCCCTCAAGAGATTGCTGCCATAGAGGCAGCTTTGGAAAAAATCCGCAGCATTATTGATGTTGTGCAAGTGGAGGTAGGAGAACTTCTAGGCGCATCAGATGTACTTCTGGAGCCATGCAATGATTTGAGGAGTTCATTGAGACGGCTTGAATCTGAACTAAGTAACTCTAGTACCGCTGAAATAGAAGCTAGAGTGGAAAATATAACATTAAACAATAAGTAG 2547 0.4032 MEKSLLEKEGASPTITWSCIVQEMKSVGYIAGPMIAVTLSQYFLQIIAMMMVGHLGKLALSSTAIAISLCAVTGFSPIFGMSCALETQCGQAYGAQQYRKFGVQIYTGIVSLTLACLPLTLLWIYLGKILALLGQDPLISQEAGNFALSMIPALFAYATLQSLVRYFLMQSLISPLVISSAITLCFHVAFCWLLVFKSELGNSGAAFSIGTSYWLNVILLGLYMKFSLQCETTRVPITMELFHGMGEFFRYAIPSAGCLEWWSFELLTLLSGLLPNPELETSVLSICLSIMTTIYTIPESIGSAASARVSNALGAGNPQAARVSVSAAMALAALEAILVSSIIFSCREVLGYVFSTEQDVVDYVTDMVPLLSLSVILDTLHGTLSGIARGCGWQHIGTYVNLGAYYVLGIPIAVILGFWVKLRGKGLWIGILVGAFSQTVMLSCITSCTNWEKQAIKARESYRTQDTNAVTPVVVVLRTMAVRAKKEKERLNLILGSYLTTIHETLQVLDQTPPSSSSAKVTWDDVIKMADQVSKQATTVGMLWSGDKPEPKAIEENMAAYFNNLQGFLLLSHASLVAAGPTLSSTVHSSVKQVVDSSFRMMKETVSLYGSHCKDQKLSVPQLVGAVWEACSALKKTPSTNITAIGRGMTQVAVSVKDVLREMKELKPDSCDDQVDKAAGESCAEAVSEPHDDNSSEGDIGNDLSPEEMKVAERAIVVVSDTLSVIKVLIHSIIGLLKLEKPNDNSSFVNSLEKLLQLCQELGRQIDEIGACLYPPQEIAAIEAALEKIRSIIDVVQVEVGELLGASDVLLEPCNDLRSSLRRLESELSNSSTAEIEARVENITLNNK 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02594 848 PANTHER PROTEIN DETOXIFICATION 11 462 - -
Cca02g02594 848 Gene3D Talin, central domain 479 634 - -
Cca02g02594 848 Pfam MatE 33 193 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca02g02594 848 Pfam MatE 258 415 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca02g02594 848 MobiDBLite consensus disorder prediction 686 703 - -
Cca02g02594 848 CDD MATE_eukaryotic 23 457 IPR045069 GO:0042910|GO:1990961
Cca02g02594 848 Gene3D I/LWEQ domain 637 805 - -
Cca02g02594 848 MobiDBLite consensus disorder prediction 670 703 - -
Cca02g02594 848 Pfam Grap2 and cyclin-D-interacting 525 795 - -
Cca02g02594 848 PANTHER MULTIDRUG RESISTANCE PROTEIN 11 462 - -
Cca02g02594 848 TIGRFAM matE: MATE efflux family protein 33 428 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02594 Cca-Chr2 47058754 47076090 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02594 02 47058754 47076090 Cca02g02594 02 47058754 47076090 ECH