Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02593 ATGGAAGAAAACCTACTAGAAAAACATGTAAAAGAGAGAGTAACATGGCGTGTTTACAATGAAGAAATGAGAAGGATCTGTCATATAGCAGGGCCTATGGTGGCTGTGGTTGCTTCACAATATTTGTTGCAAGTTGTGTCAACTATGATAGTTGGTCATGTTGGTGAACTCTATCTTTCTAGCGCCGCCTTAGCCATATCTCTTGCTGGGGTCACTGGTTTCAGTCTTCTTatgggaatggctagtggattggagacaacttgtggacaagcttatggagctgagcaatatgaaaaaattggaaTGCAAACATACACTGCCATTTTCTCTCTTACTTTGGTTTGTCTTCCCCTGTCTCTCCTTTGGATCAACATGGAAAAATTACTAATTTTCATTGGCCAAGACCCTCTAATTTCCCACGAAGCAGGGAAATTCACAATTTGGCTACTTCCAGCACTTTTTGCATACGCAATTCTACAACCATTAGTTCGATATTTCCAAATTCAAAGTTTGCTTCTTCCCATGTTAGCAAGTTCTTGTATCACTTTTTGTATCCATGTACCTCTTTGTTGGGCTTTGGTATTCAAGACAAGACTGAATAATGTTGGTGGAGCATTGGCAGTGAGCATTTCAATATGGTTAAATGTCATTTTTCTTGGATTATACATGAGATACTCTTCTGCATGTGCAAAAACTCGAGCACCCATTTCCATGGAGCTGTTCAAAGGAATTTGGGAGTTCTTTCGTTTTGCTATCCCTTCGGCAGTAATGATTTGTCTTGAATGGTGGTCATATGAGCTGCTTGTCTTGCTGTCGGGGTTGTTACCAAATCCACAACTTGAAACTTCAGTTCTATCCGTATGTCTCAACACCATTGCAACTCTCTATACAATACCCTTTGGAATCGGTGCTGCAGCAAGCACAAGGATTTCAAATGAATTAGGAGCTGGGAATTCTCATGCTGCCCGTGTTGCTGTGTTAGCAGCAATGTCTCTTGCAGTGATAGAGACAGCTATAGTAAGTGCTACACTCTTTGCATGCCGCCATGTTTTTGGTTACATTTTCAGCAATGAGAAGGAAGTTGTTGATTATGTCACTGTCATGGCCCCTCTGGTTTGCATATCTGTTATACTGGACAGCATGCAAGGTGTTCTCACAGGGATTGCAAGAGGTTGTGGATGGCAACATTTAGGGGTTTATGTCAATCTAGGGGCGTTCTATCTCTTTGGAATTCCAATTGCAGCCTTATTGGCATTTTTGGTGGGACTTGGAGGAAAAGGACTTTGGATTGGTATCCAAGGTGGTGCTTTTGTTCAAACTGTTCTACTTTCTGTCATAACAGGTTGCATAAATTGGAAAATGCAGGCGATCAAGGCAAGAAAGAGGCTATTTGATGGTCAATTTTCAGCAGACAATATAGTGGTATGA 1428 0.3915 MEENLLEKHVKERVTWRVYNEEMRRICHIAGPMVAVVASQYLLQVVSTMIVGHVGELYLSSAALAISLAGVTGFSLLMGMASGLETTCGQAYGAEQYEKIGMQTYTAIFSLTLVCLPLSLLWINMEKLLIFIGQDPLISHEAGKFTIWLLPALFAYAILQPLVRYFQIQSLLLPMLASSCITFCIHVPLCWALVFKTRLNNVGGALAVSISIWLNVIFLGLYMRYSSACAKTRAPISMELFKGIWEFFRFAIPSAVMICLEWWSYELLVLLSGLLPNPQLETSVLSVCLNTIATLYTIPFGIGAAASTRISNELGAGNSHAARVAVLAAMSLAVIETAIVSATLFACRHVFGYIFSNEKEVVDYVTVMAPLVCISVILDSMQGVLTGIARGCGWQHLGVYVNLGAFYLFGIPIAALLAFLVGLGGKGLWIGIQGGAFVQTVLLSVITGCINWKMQAIKARKRLFDGQFSADNIVV 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02593 475 Pfam MatE 32 191 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca02g02593 475 Pfam MatE 253 415 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca02g02593 475 PANTHER MULTIDRUG RESISTANCE PROTEIN 7 461 - -
Cca02g02593 475 CDD MATE_eukaryotic 22 458 IPR045069 GO:0042910|GO:1990961
Cca02g02593 475 TIGRFAM matE: MATE efflux family protein 32 429 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca02g02593 475 PANTHER PROTEIN DETOXIFICATION 7 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02593 Cca-Chr2 47046600 47051072 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02593 02 47046600 47051072 Cca02g02593 02 47046600 47051072 ECH
Cca02g02593 02 47046600 47051072 Cca08g00282 08 4059966 4065181 ECH
Cca02g02593 02 47046600 47051072 Cca09g02797 09 53595330 53598511 ECH