Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02592 ATGGAAGAGAGTCTATTAGAATCACGTAAACAAAGTGAGAAGAAGCAGAGAGTGACATGGGGTGGTTTTGGCCAAGAGATGAAGAGGATCATTCACATAGCACTGCCTATGATGCTTGTCACTGCTTCACAGTATTTGTTGCAGGTTGTCACAATCATGATGGTTGGTCACCTCAACGATGACCTCTATCTCTCCGCCGCCGCCTTAGCCATCTCTCTCGCCACCGTCACCGGTTTCAGTCTTCTTatgggaatggctagtggactggaaactatttgtggacaagcatatggagctcagcaatataaaaaaattggaGTGCAAACATATACCGCTATATTCTCTCTCATATGCGTTTGTGTTCCCCTGACTTTGCTTTGGATCAGCATGGAAAAGATACTAGTTTTCATAGGCCAGAATCCTCTAATTGCACATGAAGCCGGAAAATTCATAATTTGGCTTCTTCCAGCACTTTTTGCAAATGCAGTTCTGGGACCGGTAGTTCGATACTTTcaaatgcaaagtttgcttcttcccatgctcataagttcttgtgtcactctttgtatccacatacccctttgttgggctctggtgtttaagactggactgaacaatgttggtggagcattagcaatgagcatttcaatatggttaaatgtgatttttcttgtattatacatgagatactctcctgcatgtgcaaaaacccgtaccccaatttccatggagctattccaaggaatttgggagttctttcgctttgctgtcccttctgcagtaatgatgtgcctcgagtggtggtcatttgagctacttatcttgctgtctgggctgttaccaaatccacaacttgaaacttcagttctttctatttgTCTCAACACCATTTCAACTCTCTATGCAATACCTTTTGGAATTGCTGCTGCAGCAAGCACAAGAATTTCAAATGAACTAGGAGGTGGGAATCCACATGCTGCTCGTGTTGCTGTGTTGGCTGCAATGTCTTTTGCTGTTATGGATACAGCTATAGTCAGTGGAACCGTCTTTGCTTGTCGCCATGTTTTTGGTTATGTTTTCAGTAATGAAAAGCAAGTTGTAGATTATGTCACTGTCATGGCTCCTTTGGTTTGCATATCTGTTATATTGGACAGCATACAAGGTGTCCTGGCAGGAATTGCTAGAGGTTGTGGATGGCAACACATAGGGGTTTATGTCAATCTTGGGGCCTTCTATCTCTGTGGGATTCCAGCTTCTGCCTCACTGGCATTTTTGGCAAAACTTGGAGGAAAAGGACTTTGGATTGGAATACAAGTCGGTGCTTTTGTTCAATGTGTTCTATTTTCTACCATAACAATTTGCATCAATTGGGAACAGCAGGCAATCAAGGCAAGAAAGCGGTTATTTGATGGTGAAATTTCAGCAGAAAGTAGATTGGTATGA 1443 0.3008 MEESLLESRKQSEKKQRVTWGGFGQEMKRIIHIALPMMLVTASQYLLQVVTIMMVGHLNDDLYLSAAALAISLATVTGFSLLMGMASGLETICGQAYGAQQYKKIGVQTYTAIFSLICVCVPLTLLWISMEKILVFIGQNPLIAHEAGKFIIWLLPALFANAVLGPVVRYFQMQSLLLPMLISSCVTLCIHIPLCWALVFKTGLNNVGGALAMSISIWLNVIFLVLYMRYSPACAKTRTPISMELFQGIWEFFRFAVPSAVMMCLEWWSFELLILLSGLLPNPQLETSVLSICLNTISTLYAIPFGIAAAASTRISNELGGGNPHAARVAVLAAMSFAVMDTAIVSGTVFACRHVFGYVFSNEKQVVDYVTVMAPLVCISVILDSIQGVLAGIARGCGWQHIGVYVNLGAFYLCGIPASASLAFLAKLGGKGLWIGIQVGAFVQCVLFSTITICINWEQQAIKARKRLFDGEISAESRLV 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02592 480 CDD MATE_eukaryotic 26 463 IPR045069 GO:0042910|GO:1990961
Cca02g02592 480 PANTHER MULTIDRUG RESISTANCE PROTEIN 16 467 - -
Cca02g02592 480 Pfam MatE 36 196 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca02g02592 480 Pfam MatE 258 418 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca02g02592 480 PANTHER PROTEIN DETOXIFICATION 16 467 - -
Cca02g02592 480 TIGRFAM matE: MATE efflux family protein 36 434 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02592 Cca-Chr2 47038579 47041997 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02592 02 47038579 47041997 Cca02g02592 02 47038579 47041997 ECH
Cca02g02592 02 47038579 47041997 Cca08g00283 08 4071301 4076285 ECH
Cca02g02592 02 47038579 47041997 Cca09g02800 09 53610664 53614119 ECH