Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02588 ATGGCCGCGTCGCCGTCGTCCTCCACCGCGGCGAACATCATGCTGGCGATCTTTGAGAAGAAGACGAACAGCGTAGATCTGTACCGTCCTCTCCGGAACTACGTGGCCTTCCACTACTCCGAGCGGGAGGCCCAAAACCTCGAAGACGATCTCCAAACCCTAAAGCAACTCCGCTCCGACCTCGAGCGCCACTCCGATCCCTCCCTCCCGGCGCGCCGCGACCTCCTCCAAACCTACTTCAAATCCTTGTGCCTCGTCGAGACGCGTTTCCCTATCTCCTCTGACCCCGACCACGTCAACGCCCTCACCTTCGTCTGGTTCGACGCCTTCAAGCCGAAGCAGAAGGCCTCGCAGCAGAACATCCACCTCGAGAAGGCATCCGTGCTCTTCAATTTGGGCGCCGTTTACAGTCAGATTGGACTGTCGCATGATCGGAACACCGTCGACGGCCGCCGCCAGGCCTCCCACGCCTTCATCGCCGCCGCTGGCTCCTTCGCCTTCCTCCGCGACAACGCCTCCATGAAGGCCTCCGTCGGCAGCTCCACCACCGTCGATTTGTCCGTCGAGTGCGCCGGCATGTTGGAGAAGCTCATGCTCGCGCAGGCTCAGGAATGCGTCTTCGAGAACACCATTGCCAAAGGGAGCACCCCCGGCGTCTGTGCCAAGATTTCTAGGCAGGTTGGGATATATTATGAGGAAGCTTTAGCTGCGCTGAATGTTGCACCTCTCAGCCAGCATTTTGATAAGTCATGGATAGTTCACGTGCAGTTAAAGGCGGCGCTGTTCTACGCAGAAGCTTGTTATAGGTGTGGATTGGAGCTGCATGAGAAAGAGGAGATAGCAGAGGAGATTGCACGGCTAAGGAGTGCTGTTAATGTGCTGGCCGAGGCGAAGAAGAGTTCAAAGGGTGCTGCAGCACAAATTATAGATGCTATTGGCAAATTAGAGGCCAATATTAATCGGAACCTGGAAAGGGCTGTCAAGGAGAATGATAGAGTTTACCTCATGAGAGTTCCCTCCACGAGTTCATTACCGCCTCTTCCAGCATTTTCTATGGTGAAGCCTATGGCAATGAATGAGTTGCTGGATGCAAGCAAAGAGAAAATGTTTGCGAGTCTTGTTCCTGATAGCAGTGCAAAGGCCCTCTCCCGGTATACTGAAATGGTAGACGACGTTATAAGAACACAGGCAGAAAAGTTACAGCAAGCTAGTGAGCTAACCAGAGTTAGGCTTAAGGAAATGGAACTGCCAGATTCCATTCTTGCTTTGGAAGGAAATTTTACCCTACCAACAAGTCTCAAAGAAGATGTGGAGGCTGTGCAGATCAGTGGGGGACCTGCTGGTTTGGAGGCAGAGTTGCAACAACTTAAGGACCTAAGGAGGGTGAATCAAGAATTGCTGGTCCAGACTGAGGAGTTGTTGCAGAAGGAGGCAAGAGAAGATTCTCAATTTAGAAGCCAATTTGGCACAAAATGGACTAGGCCTCAATCAAGCACCTTGACCAAGAACTTGCAGGATAGGCTAAACAGGTTTGCAGGTAACTTGAAGCAAGCTGCTGAAAGTGATGGTAGGATTGAGCGTTCGGTTAGAGAACATACAGCACTCATGTCAATTCTTGATGCTCGTCCGATTGAATCTGCACTTCCAAGCTTGGCAAGACCGATTATGTCTTTTGATCAAAATGAAGATGCTATTGTGGGGTCACTCAAGCAAAGCTTGAGGCAACTAGAAACTCTAGGAGCTCAAAGGGCTGGTCTAGAAGATATGCTTAAAGAGATGAAAAGAAAGGATGATATATTACCAAAGTTGATGACATCCACTGGTTCTTATGATGATCTCTTCAAGAAGGAAATAGCAAAATATGACCATATTTGTGAAGAAATAGCTCAAAATATTGAGGCGCAAGAGCAATTGTTGCTGCAGATCCAGGCTCAAAATGACGAGTTCTCTGTTATCTTCAATCTTGAAGATTACAAAGCTTCACGTGAAAAAGCCTATAAGCAGATTGAAGCTGCCATATCAAAATTTCGAGAAATAAAGGACAACATTAATGAAGGGTTAAAATTCTATGTTACTCTGCAGGATGCAATCACAAATGTAAAGCAGCAGAGCACGGACTTTGTGATGACAAGGAACATTCAGTGCAGAGAAATGATTGAAGATGTTCAGAGACAAGTGGCTGGTCTGAGTTTCCAGGATAACAAAAACACAGGTGCTTTTAACAACAACTACCCTTCAGTGGGAAGCCAAAATCAAAGATCCACTACACAAACAGATCCTCGTCCCCAAACACCATATTATCAGCCAGTTGAGCAGCCACCAGTTCCtccctatccccatcaccccccttccccatATGGTGGTCCTGCACATCATGCACCTCCACCTCCATACCATATTCCACCGGCATCAACTGCTCCATACCCACCTCAGGTTCATCAGCAACCACCGGCAAACCATGAGTATGGCCAACCAGCCTATCCTGGATGGCGTGGTCCGTACTACAACGCTCAAGCGCAGCAACCTGGTTCTGTTCCCCGGCCTCCTTATACCATTCCATCTCCATATCCTCCACCTCACCAAAGCGGCTATTATAAGCAGCAATAG 2607 0.4848 MAASPSSSTAANIMLAIFEKKTNSVDLYRPLRNYVAFHYSEREAQNLEDDLQTLKQLRSDLERHSDPSLPARRDLLQTYFKSLCLVETRFPISSDPDHVNALTFVWFDAFKPKQKASQQNIHLEKASVLFNLGAVYSQIGLSHDRNTVDGRRQASHAFIAAAGSFAFLRDNASMKASVGSSTTVDLSVECAGMLEKLMLAQAQECVFENTIAKGSTPGVCAKISRQVGIYYEEALAALNVAPLSQHFDKSWIVHVQLKAALFYAEACYRCGLELHEKEEIAEEIARLRSAVNVLAEAKKSSKGAAAQIIDAIGKLEANINRNLERAVKENDRVYLMRVPSTSSLPPLPAFSMVKPMAMNELLDASKEKMFASLVPDSSAKALSRYTEMVDDVIRTQAEKLQQASELTRVRLKEMELPDSILALEGNFTLPTSLKEDVEAVQISGGPAGLEAELQQLKDLRRVNQELLVQTEELLQKEAREDSQFRSQFGTKWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDGRIERSVREHTALMSILDARPIESALPSLARPIMSFDQNEDAIVGSLKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSTGSYDDLFKKEIAKYDHICEEIAQNIEAQEQLLLQIQAQNDEFSVIFNLEDYKASREKAYKQIEAAISKFREIKDNINEGLKFYVTLQDAITNVKQQSTDFVMTRNIQCREMIEDVQRQVAGLSFQDNKNTGAFNNNYPSVGSQNQRSTTQTDPRPQTPYYQPVEQPPVPPYPHHPPSPYGGPAHHAPPPPYHIPPASTAPYPPQVHQQPPANHEYGQPAYPGWRGPYYNAQAQQPGSVPRPPYTIPSPYPPPHQSGYYKQQ 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02588 868 MobiDBLite consensus disorder prediction 733 868 - -
Cca02g02588 868 Gene3D alix/aip1 like domains 9 374 IPR038499 -
Cca02g02588 868 Coils Coil 576 596 - -
Cca02g02588 868 Pfam ALIX V-shaped domain binding to HIV 429 713 IPR025304 GO:0005515
Cca02g02588 868 Gene3D alix/aip1 in complex with the ypdl late domain 375 653 - -
Cca02g02588 868 Coils Coil 625 645 - -
Cca02g02588 868 MobiDBLite consensus disorder prediction 733 765 - -
Cca02g02588 868 Coils Coil 449 476 - -
Cca02g02588 868 SMART BRO1_2 13 397 IPR004328 -
Cca02g02588 868 MobiDBLite consensus disorder prediction 766 814 - -
Cca02g02588 868 CDD BRO1_Alix_like_1 14 369 - -
Cca02g02588 868 PANTHER PROGRAMMED CELL DEATH 6-INTERACTING PROTEIN-LIKE 3 857 - -
Cca02g02588 868 Coils Coil 655 675 - -
Cca02g02588 868 CDD V_Alix_like_1 375 711 - -
Cca02g02588 868 ProSiteProfiles BRO1 domain profile. 12 407 IPR004328 -
Cca02g02588 868 Coils Coil 277 297 - -
Cca02g02588 868 MobiDBLite consensus disorder prediction 846 860 - -
Cca02g02588 868 PANTHER PCD6 INTERACTING PROTEIN-RELATED 3 857 IPR045251 GO:0071985
Cca02g02588 868 Gene3D alix/aip1 like domains 421 702 - -
Cca02g02588 868 Pfam BRO1-like domain 14 392 IPR004328 -
Cca02g02588 868 Coils Coil 37 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02588 Cca-Chr2 46993807 47001409 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02588 02 46993807 47001409 Cca02g02588 02 46993807 47001409 ECH