Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02584 ATGAGCAATCCCAACGAAGAAGAACCATTAACTAAAGCTGCAAGAGCAGCAGAAGATCTTTACCATCTTCGAGACACTTATTTCCCACCCAACCCTGATGACAGAATCGCCAAGTTGCAACACCAATCCGATCTCGCTCTTAAACTCCTCGATTCCATTCCCCCAGAACAAAGAAAATCACCTATGCAACGTGCAACATTTGAATATCTTAGAGGAAAGATGTTGGATGTATTTCCAGACTATAGGAAAGAAGCTGAAGATCATCTATCAAAAGCTGTTAAGTTAAACCCATCTCTTGCAGATGCTTGGCTTTGTTTAGGAAATTGCATTTGGAAGAAAGGAGATTTAACTGCTGCAAAGAACTGCCTCAGTCTTGCATTGGACAAGGGTCCTAACAAAAAGATTCTTTGTCAGTTATCAATGCTTAAAAGAAAAATGTCTCAAGGTGCGGAGAATCAAGCCGAACTGGTTGACGAAAGCATTCAACATGCCAAGGAAGCAATCACTTTGGATGTCAAGGATGGGAACTCTTGGTATAATCTTGGAAATGCATGCCTTACAAGTTTTTTTGTCACCGGAGCTTGGGATCATACAAAGCTTTTACATTCTTTAAAAGCATATCAGAATGCTGAGAAAGATGAAAGAATGAAGTCCAATCCAGACTTATATTTTAATAGTGCTACTGTTAACAAATATCTAGAGAACTACCAGAGGGCCCTTAGTGGATTTGAGGCTGCTGCTTTAAAGGATCCAGGTCTCAATGCTGCAGAGGAGGTTCAGAAGATAGTCAATTTACTTGACAAGGTGGACAATCTTTTGAAGGGACATGTAAGAGCTAGGCGAATGGCGTCTTTGGCATCATCACTGGTTTCTGTTGATTTGAAATCGTCATACAGAAGAGTTACCATAGACCTTCTGTCAGAGGGTCCGAATAGAACTCTTGCAGTAGAGGGGAAAGTGTTTTTCTTTGTTAGGAGTGAGAGTGTTGCTCCACTATACTATTTGCTTTGTGATTCAAATCAATCTTGCTTTGTTCTCTCAGTTTATGGTGTACGTACTGATGTGATTAAAGAAGGAGATCAGCTAACACTGCTTGACCCTTATTTTCGTGATGTTGATTTGTCCTGGAATGAGAAGCATTACCAGTTCAAATCTATACGCCTGGATTTCTATGAACAAGTGCTTGTAAATGGAAAAGCTTTGACTCCTCAACAAGCTGTTTGTACGTCAATATATGCACAACATAAACCCTGA 1254 0.4011 MSNPNEEEPLTKAARAAEDLYHLRDTYFPPNPDDRIAKLQHQSDLALKLLDSIPPEQRKSPMQRATFEYLRGKMLDVFPDYRKEAEDHLSKAVKLNPSLADAWLCLGNCIWKKGDLTAAKNCLSLALDKGPNKKILCQLSMLKRKMSQGAENQAELVDESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGAWDHTKLLHSLKAYQNAEKDERMKSNPDLYFNSATVNKYLENYQRALSGFEAAALKDPGLNAAEEVQKIVNLLDKVDNLLKGHVRARRMASLASSLVSVDLKSSYRRVTIDLLSEGPNRTLAVEGKVFFFVRSESVAPLYYLLCDSNQSCFVLSVYGVRTDVIKEGDQLTLLDPYFRDVDLSWNEKHYQFKSIRLDFYEQVLVNGKALTPQQAVCTSIYAQHKP 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02584 417 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 8 341 - -
Cca02g02584 417 Gene3D Tetratricopeptide repeat domain 3 276 IPR011990 GO:0005515
Cca02g02584 417 Pfam Tetratricopeptide repeat protein 5 OB fold domain 298 409 IPR032076 -
Cca02g02584 417 Gene3D - 277 416 IPR038645 -
Cca02g02584 417 SUPERFAMILY TPR-like 72 244 IPR011990 GO:0005515
Cca02g02584 417 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 8 341 - -
Cca02g02584 417 SMART tpr_5 100 133 IPR019734 GO:0005515
Cca02g02584 417 SMART tpr_5 220 253 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02584 Cca-Chr2 46931501 46941204 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02584 02 46931501 46941204 Cca02g02584 02 46931501 46941204 ECH