Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02569 ATGGCGGGTTTTGGCGGGAAAAAGGTGCACCAAATGATCGCCGGTTTCGGCGGTAGCGGCCTTGGCCAGGTCGTCATCGCCGTCGCCGTATCCTTCCTCGTCCGCGTCTTCTCCGCTCCCGGCCCTGCTCTCTCGCCGGAGAACGACGCCGACGATGAGTTAGACAACGATTCCGGCGACGCCGAAGCTCCTCCATCCGGAAAGGTCAGGCCGGTCACAATCCGCTGGAGAAACATCAATTGCTCCGTTTCCGATAAATCCTCCAAGTCCGTGAGGTTTTTGCTTAAGAATGTGAGTGGTGAAGCGAGGCCTGGAAGATTATTAGCCCTAATGGGACCTTCAGGTTCAGGGAAGACAACGTTGCTAAATGTTCTGGCGGGTCAGCTCACAGCATCTCCTCGGTTGCATTTGAGTGGCGTTTTGGAGTTCAATGGAAAGCCTGGTTCCAATAACGCTTACAAGTTTGCTTATGTGAGACAGGAGGATCTCTTTTTCTCGCAGCTCACTGTGCGGGAAACGCTGTCTCTTGCTACAGAACTCCAGCTTCCCGACATATCTTCTGTGGAAGAGAGGGATGAATTCGTGAACAATCTCCTTTTCAAACTAGGCTTGGTTAGTTGTGCTGATACCAATGTTGGTGATGCAAAAGTTCGTGGAATTAGTGGTGGTGAAAAGAAACGCTTATCCTTGGCATGTGAACTGCTTGCAAGCCCATCCGTTATATTTGCTGATGAACCCACAACAGGACTTGATGCCTTCCAGGCTGAGAAAGTCATGGAAACTCTCCAACAACTTGCACAAGATGGTCATACTGTAATTTGTTCCATACATCAGCCAAGAGGTTCAGTGTATAGTAAATTTGACGACATCATCTTGCTAACAGAGGGTTCACTTGTTTATGCTGGTCCTGCTCGTGATGAACCACTGACATACTTCTCAAAATTTGGGTACCACTGCCCAGATCATACAAATCCTGCTGAATTCTTGGCGGATCTTATATCCATAGACTACAGTTCTGCTGATAGTGTCTATACCTCTCAAAAAAGGATTGATGGTCTTGTTGAGTCATTCTCACAAAGACTATCTGCAGTTATATATGCAACTCCAATTACTGTAGATGATCTCTTGAATAGTAGAAAGAAAATCAACAAGAGGGCTGTAGCAAAGAAGAAAGGAGTTTGGTGGAAGCAATTTTGGTTGCTCCTTAAAAGAGCATGGATGCAGGCATCCCGTGATGCACCAACCAACAAAGTTCGGGCAAGGATGTCAATTGCATCGGCAATTATCTTTGGGTCAGTATTTTGGAGAATGGGAAATTCTCAGACCTCAATACAAGATAGAATGGGATTGCTTCAGGTTACTGCAATAAACACAGCTATGGCTGCTCTCACAAAGACTGTAGGTGTGTTTCCAAAGGAACGGGCAATTGTAGATAGAGAACGTGCTAAAGGTTCCTATTCCCTGGGTCCTTATCTGTTCTCAAAATTGTTGGCTGAGATTCCGATTGGAGCAGCATTTCCATTAATGTTTGGTGCTGTTTTGTATCCAATGGCACGTCTTCATCCTACTTTGCAGAGATTTGGGAAATTTTGTGGCATTGTCACCATGGAATCTTTTGCTGCATCCGCTATGGGTCTTACAGTTGGTGCTATGGTTCCAACCACGGAAGCAGCAATGGCAGTAGGTCCCTCTCTTATGACAGTTTTTATTGTATTTGGAGGCTACTATGTAAATCCTGAGAATACCCCAATCGTCTTCCGATGGATTCCTAATGTTTCTCTGATTAGATGGGCATTTCAGGGACTTTCTATCAACGAATTTAGTGGCCTTCAATTTGACCATCAACATTCATTTGATATTCAAACTGGAGAACAGGCACTAGAGCGTATTTCCTTCGGAAAAAGTAGGATCAGGGATACGGTGATAGCACAAAATAGAATACTGCTGTTTTGGTATTGCACCACCTACCTTCTTCTCGAGAAAAACAAACCTAAATACCAGCAACTTGAAAGCCCTATTATTGGCCACAACAAACCGCATTTAAAACTTGAGGAGCTCAATTCTGAACAAGTTGATCAGACACTTGAAGCTCCGCCAGTCAGCCAAGTTGATTCCAAGCAGCCCCTTGAGTCATCTGAAGTAGATCTTGTTGGCCCATTTGTCCTAGAAGGTTTGTAA 2178 0.4518 MAGFGGKKVHQMIAGFGGSGLGQVVIAVAVSFLVRVFSAPGPALSPENDADDELDNDSGDAEAPPSGKVRPVTIRWRNINCSVSDKSSKSVRFLLKNVSGEARPGRLLALMGPSGSGKTTLLNVLAGQLTASPRLHLSGVLEFNGKPGSNNAYKFAYVRQEDLFFSQLTVRETLSLATELQLPDISSVEERDEFVNNLLFKLGLVSCADTNVGDAKVRGISGGEKKRLSLACELLASPSVIFADEPTTGLDAFQAEKVMETLQQLAQDGHTVICSIHQPRGSVYSKFDDIILLTEGSLVYAGPARDEPLTYFSKFGYHCPDHTNPAEFLADLISIDYSSADSVYTSQKRIDGLVESFSQRLSAVIYATPITVDDLLNSRKKINKRAVAKKKGVWWKQFWLLLKRAWMQASRDAPTNKVRARMSIASAIIFGSVFWRMGNSQTSIQDRMGLLQVTAINTAMAALTKTVGVFPKERAIVDRERAKGSYSLGPYLFSKLLAEIPIGAAFPLMFGAVLYPMARLHPTLQRFGKFCGIVTMESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNPENTPIVFRWIPNVSLIRWAFQGLSINEFSGLQFDHQHSFDIQTGEQALERISFGKSRIRDTVIAQNRILLFWYCTTYLLLEKNKPKYQQLESPIIGHNKPHLKLEELNSEQVDQTLEAPPVSQVDSKQPLESSEVDLVGPFVLEGL 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02569 725 PANTHER ABC TRANSPORTER G FAMILY MEMBER 7 1 675 - -
Cca02g02569 725 PANTHER ATP-BINDING CASSETTE TRANSPORTER 1 675 - -
Cca02g02569 725 SMART AAA_5 104 297 IPR003593 -
Cca02g02569 725 Gene3D - 67 309 IPR027417 -
Cca02g02569 725 Pfam ABC-2 type transporter 277 334 IPR043926 GO:0140359
Cca02g02569 725 ProSitePatterns ABC transporters family signature. 220 234 IPR017871 GO:0005524
Cca02g02569 725 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 306 IPR027417 -
Cca02g02569 725 CDD ABCG_EPDR 71 302 - -
Cca02g02569 725 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 74 320 IPR003439 GO:0005524
Cca02g02569 725 MobiDBLite consensus disorder prediction 44 69 - -
Cca02g02569 725 Pfam ABC-2 type transporter 397 607 IPR013525 GO:0016020|GO:0140359
Cca02g02569 725 Pfam ABC transporter 95 247 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02569 Cca-Chr2 46822556 46830189 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02569 94 302 Calmodulin-binding Proteins AT2G36910 29.108 3.19e-11 65.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02569 02 46822556 46830189 Cca02g02569 02 46822556 46830189 ECH