Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02565 ATGTCCTCTTTGCAACCAGTGTTCCATGGCACTCTTCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGATCATCCAAACGATTCACCATCCCCAATCACCTTCTCCTCACAAAATCCCTTCCACCTTCGCCAAGTTCTAATTTTGACCACCATGACTCCATACCCACAACCCAAATCCCCTATGGGCTTCCAAAAACCCACACATTCTCCTCTCACACGGCCCACCCCCGGCCCACCCCCGACGCCGAAACAATCTGCAGAATCTTATCCACCACCCGCGGTTCCACCGTCGACGCCTCCCTCGCCGCCGTGCCGGCGAAGCCCTCGCCGGAGCTCGTCCTCGAAGTCCTGAACAAACTCAGCAACGCCGGCGTTCTCGCGCTTTCGTTCTTCCGTTGGGCCGAGAAGCAGAGAGAGTTCAAACACACCACCGAAATCTTCCACTCTCTGATCGAATCTCTGGGTAAGATCAGACAGTTCAAAATGATTTGGACTCTGGTGAACGACATGAACCGCCGAAAGTTGCTTTCTTCGGACACTTTCGCTCTCGTCGCTCGGCGGTACGCGAGAGCAGAGAAGGTCAAGGAAGCGGTTGAGACATTTGAGAAGATGGAGCACTACGGTTTGAAGCCGCACGTGTCGGATTTCAACAGATTGATCGATGTGTTGTGTAAATCCAAGTGTGTTGAGAAGGCACACGAGGTGTTTGATAGAATGCGGCACTTAGGGTTGCACCCTGATATTAAGACCTACACCATTTTGCTAGAAGGGTGGAGTCAGCAGCAGAATTTGATGAGAGTCAATGAGGTGTGTAGGGAGATGGAGAATGAAGGCTTTCACCTTGATGTTGTTGCTTATGGGATAATCATCAATGCGTATTGTAAGGCCAAGAAATTTGATGAGGCTATTGGGTTGTACCATGAGATGAAAGCCAAGAGTGTGAGGCCTAGTCCCCATGTATTTTGCACTTTGATTAATGGTTTGGGTTCTGATAAGAGATTGAATGAAGCTCTTGAGTTTTTTGAGGTGTCAAAGGCTAGTGGCTTTGCACCTGAGGCTCCAACTTATAATGCTGTTGTTGGGGCTTATTGCTGGTCTTTGCGGATGGATGATGCATATAGGATGGTTGGTGAGATGAAAAAATGTGGGATTGGTCCGAACTCTCGGACGTGTGATATTATACTTCATCACCTGATAAAGGGTCGTAGGATTGAAGAAGCTTGCTCGTTTTTTCGGCGGATGAGCGGCGAGTTTGCTTGTGAGCCGAGTGTGAGCACGTATGAGATCATGGTGAGGATGTTTTGTAATGAAGAGAGGTTGGATATGGCGATGGAGGTTTGGGATGAGATGAAGGGGAAGGGAATTCTTCCTGGAAGGCATATGTTCTCCACGTTGGTATGTGCTTTGTGCCATGAGAATAAGTTGGATGAAGCGTGCAAGTACTTTCAAGAAATGTTGGATTTGGGCAATAGACCTCCTGCTAAAATGTTTAGTACCTTGAAGGAAGCTTTGGTTGATGCTAGGATGGAGAATACTGCCATGTATTTCGCTTTGCAAATTGATAAACTCAGGAAAACTCCATTAGTTGCTTGA 1677 0.4484 MSSLQPVFHGTLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSSKRFTIPNHLLLTKSLPPSPSSNFDHHDSIPTTQIPYGLPKTHTFSSHTAHPRPTPDAETICRILSTTRGSTVDASLAAVPAKPSPELVLEVLNKLSNAGVLALSFFRWAEKQREFKHTTEIFHSLIESLGKIRQFKMIWTLVNDMNRRKLLSSDTFALVARRYARAEKVKEAVETFEKMEHYGLKPHVSDFNRLIDVLCKSKCVEKAHEVFDRMRHLGLHPDIKTYTILLEGWSQQQNLMRVNEVCREMENEGFHLDVVAYGIIINAYCKAKKFDEAIGLYHEMKAKSVRPSPHVFCTLINGLGSDKRLNEALEFFEVSKASGFAPEAPTYNAVVGAYCWSLRMDDAYRMVGEMKKCGIGPNSRTCDIILHHLIKGRRIEEACSFFRRMSGEFACEPSVSTYEIMVRMFCNEERLDMAMEVWDEMKGKGILPGRHMFSTLVCALCHENKLDEACKYFQEMLDLGNRPPAKMFSTLKEALVDARMENTAMYFALQIDKLRKTPLVA 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02565 558 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Cca02g02565 558 MobiDBLite consensus disorder prediction 69 105 - -
Cca02g02565 558 Pfam PPR repeat 214 236 IPR002885 -
Cca02g02565 558 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 240 274 IPR002885 -
Cca02g02565 558 Gene3D Tetratricopeptide repeat domain 428 546 IPR011990 GO:0005515
Cca02g02565 558 Gene3D Tetratricopeptide repeat domain 130 204 IPR011990 GO:0005515
Cca02g02565 558 Gene3D Tetratricopeptide repeat domain 325 427 IPR011990 GO:0005515
Cca02g02565 558 Gene3D Tetratricopeptide repeat domain 205 324 IPR011990 GO:0005515
Cca02g02565 558 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 310 344 IPR002885 -
Cca02g02565 558 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 309 IPR002885 -
Cca02g02565 558 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Cca02g02565 558 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 486 520 IPR002885 -
Cca02g02565 558 TIGRFAM PPR: pentatricopeptide repeat domain 418 450 IPR002885 -
Cca02g02565 558 TIGRFAM PPR: pentatricopeptide repeat domain 244 276 IPR002885 -
Cca02g02565 558 TIGRFAM PPR: pentatricopeptide repeat domain 454 485 IPR002885 -
Cca02g02565 558 TIGRFAM PPR: pentatricopeptide repeat domain 348 379 IPR002885 -
Cca02g02565 558 TIGRFAM PPR: pentatricopeptide repeat domain 489 520 IPR002885 -
Cca02g02565 558 TIGRFAM PPR: pentatricopeptide repeat domain 312 345 IPR002885 -
Cca02g02565 558 TIGRFAM PPR: pentatricopeptide repeat domain 383 415 IPR002885 -
Cca02g02565 558 TIGRFAM PPR: pentatricopeptide repeat domain 208 239 IPR002885 -
Cca02g02565 558 Coils Coil 51 51 - -
Cca02g02565 558 MobiDBLite consensus disorder prediction 69 109 - -
Cca02g02565 558 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 107 555 - -
Cca02g02565 558 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 205 239 IPR002885 -
Cca02g02565 558 PANTHER OS01G0505500 PROTEIN 107 555 - -
Cca02g02565 558 Pfam PPR repeat family 383 427 IPR002885 -
Cca02g02565 558 Pfam PPR repeat family 450 499 IPR002885 -
Cca02g02565 558 Pfam PPR repeat family 310 356 IPR002885 -
Cca02g02565 558 Pfam PPR repeat family 243 285 IPR002885 -
Cca02g02565 558 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 451 485 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02565 Cca-Chr2 46794747 46796423 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02565 175 544 Glycosyltransferase AT1G05670 25.606 3.51e-41 156
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02565 02 46794747 46796423 Cca02g02565 02 46794747 46796423 ECH