Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02149 ATGATTAGGGCTTCTAATCAGAGATGCACCAATTTATGTGATGAAGTTAGCACCATAATAGATCACAAATTTCATGAAAATGCAGTGGTGATGAAAAGGATATATAGAAGTGCACGTGTCGAGCATTGGGTTCTGGTACGATTGTCTGTCAGTTTACTATGGGCTAATCACAAATCTGGGAGCCCAAAATCATTAAAGGAAACCGACAATGCTAAGGATTTGCAGAAAGTGCAGGGAGTCAGTTCCATTTTGCATCCTCCGTTAATCACGTGGTTGGCAACGGTGGCGCACCAAAGGGGTTCGGATAGGTTGGGGGCGGAGCAAGGAGTGGACGATGAGGAAGCGGAAGGGAGTCTAGGTTCGGTTCCGAGGCATGTGGTGTCACCACCCTCGGGTTCAAGCCAAAGCGAAAGCAACAGGGAGTGGGTCCCACTCCCGGCGAGTGGTTTTCCCATGATGCCACGTTTTATGCATGTATCTTCCCCTCCAGGTTTGTCTTCTTCTTCTGGGTCTGGGCCTTCTCTTATGGGCCCGGTCCCTGCTTCTGGTTGGGCTGGGCAGAAAAGAACGCGTGAAGATGAGACGGGTGGTTGTTTGACACGTGGGAGCGAGGAAGAAAGCGGGGAGAGGAGGAGGAGATACAGAGGGGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCGGAGATTCGTGACCCTCAGAAAGCGGCGAGAGTGTGGCTTGGGACGTTCGACACGGCTGAGGCTGCAGCCAGGGCTTACGATGAAGCCGCATTGAGGTTCAGAGGCAACAGAGCCAAACTCAACTTCCCCGAGAACGTTGCAGCGCTTCGCCCTCCACTTCCCGATTCCACGCCTGCTGCCTCCGCGCTGCTCCAGGGGGCGCCCGTTCAGGACTCCTCCGACGTGCTCAGAGACTACTGGGGCTATTCTCAGCTGCTGAGCGGCTCAGGGGAGTTCCATGGACTCGACCCCTGGCTCTTTGATTCGCAAATGGCAACGCTTCAGTCTTCCTCTTCCTTTTTATCGCCGCCTGCGTTTCCGCCCTCCTCAGCTTCCTTTCCCCTCTTTTCTAGCCCCCAATTTGGGGTTTTCCGGCCGCCGCCTCACCACCCTCAAGGCGCCGGAGACGCTGCTGCCGCCTCACACTTTCCGCCTTCCACGTGGTCAGATACCGCTGGCTATCCTCCTCCGCCACCTGGACCTGGTTGA 1209 0.5575 MIRASNQRCTNLCDEVSTIIDHKFHENAVVMKRIYRSARVEHWVLVRLSVSLLWANHKSGSPKSLKETDNAKDLQKVQGVSSILHPPLITWLATVAHQRGSDRLGAEQGVDDEEAEGSLGSVPRHVVSPPSGSSQSESNREWVPLPASGFPMMPRFMHVSSPPGLSSSSGSGPSLMGPVPASGWAGQKRTREDETGGCLTRGSEEESGERRRRYRGVRQRPWGKWAAEIRDPQKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVAALRPPLPDSTPAASALLQGAPVQDSSDVLRDYWGYSQLLSGSGEFHGLDPWLFDSQMATLQSSSSFLSPPAFPPSSASFPLFSSPQFGVFRPPPHHPQGAGDAAAASHFPPSTWSDTAGYPPPPPGPG 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02149 402 MobiDBLite consensus disorder prediction 161 175 - -
Cca02g02149 402 ProSiteProfiles AP2/ERF domain profile. 213 270 IPR001471 GO:0003700|GO:0006355
Cca02g02149 402 PRINTS Ethylene responsive element binding protein signature 236 252 IPR001471 GO:0003700|GO:0006355
Cca02g02149 402 PRINTS Ethylene responsive element binding protein signature 214 225 IPR001471 GO:0003700|GO:0006355
Cca02g02149 402 Pfam AP2 domain 213 262 IPR001471 GO:0003700|GO:0006355
Cca02g02149 402 MobiDBLite consensus disorder prediction 103 143 - -
Cca02g02149 402 SMART rav1_2 213 276 IPR001471 GO:0003700|GO:0006355
Cca02g02149 402 PANTHER DNA-BINDING DOMAIN 154 359 IPR044808 GO:0003700|GO:0009873
Cca02g02149 402 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 154 359 - -
Cca02g02149 402 CDD AP2 221 272 IPR001471 GO:0003700|GO:0006355
Cca02g02149 402 Gene3D AP2/ERF domain 212 272 IPR036955 GO:0003700|GO:0006355
Cca02g02149 402 MobiDBLite consensus disorder prediction 362 402 - -
Cca02g02149 402 SUPERFAMILY DNA-binding domain 213 271 IPR016177 GO:0003677
Cca02g02149 402 MobiDBLite consensus disorder prediction 160 212 - -
Cca02g02149 402 MobiDBLite consensus disorder prediction 127 142 - -
Cca02g02149 402 MobiDBLite consensus disorder prediction 187 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02149 Cca-Chr2 41731586 41742501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02149 204 273 AP2-EREBP Transcription Factor Family AT2G33710 77.143 1.52e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca02g02149 AP2 3.8e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00860 08 19216532 19219058 Cca02g02149 02 41731586 41742501 PCT