Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01665 ATGGACACAGCTCACTGGCCACAGGAGATGGTGGTGAAACCAATAGAAGATATAGTAGTGACAAATACATGTCCAAAGGGTGTGGAAAAGAAGGCAAGGCCACAGAAGGAACAAGCCCTTAACTGTCCAAGGTGTCATTCAATTAACACCAAGTTCTGCTACTACAACAACTACAGCCTCACACAGCCTCGCTATTTCTGCAAGACTTGTAGAAGGTATTGGACTGAAGGTGGATCCCTCAGAAACATCCCTGTAGGAGGTGGATCAAGGAAGAACAAGAGATCTTCTTCTTCTTCCACACCTAATAATAAGAAGCTTAATGTTCCTGATCTAGTCATCTCACCTCCAACTTTGTCACACACTCAAAACCCTAAGAATAATAATAATGTTCATCAAGGCCAAGATCTCAATTTGGCTTTTCCAGCAACCGTCCCAGATTTCAGAAACATATCTGAATTGGTTcaacaaaataacaacaacaatagtagcaacagcaaTATGtcagcttcagtttctgcttcttcttcttcttcaactactactactactCCAGCCACAACAGCTTCTCACCTTTCTGCAATGGAGCTTCTTTCTGGGATCACTTCAAGTTCCACTGGTTTGAATGCTTTCATGCCTATGCCAGTTCCTGCTAGATCGGGAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTGATCCAAATTCCGTCTACACTTGTGGGTTTCCTCTGCAAGATTTCAAGCCAACCCTGAATTTCTCTTTAGATGGGTATGCAAGCCTTCACAATGTTCAAAGTGGGAGACTCTTGTTTCCGTTTGAGGACTTGAAACAGGCGGTGGATCATGATCATATGAGGACTTCACTTGTTTGGATTTCTTCATGA 1053 0.3191 MDTAHWPQEMVVKPIEDIVVTNTCPKGVEKKARPQKEQALNCPRCHSINTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSSSSTPNNKKLNVPDLVISPPTLSHTQNPKNNNNVHQGQDLNLAFPATVPDFRNISELVQQNNNNNSSNSNMSASVSASSSSSTTTTTPATTASHLSAMELLSGITSSSTGLNAFMPMPVPARSGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADPNSVYTCGFPLQDFKPTLNFSLDGYASLHNVQSGRLLFPFEDLKQAVDHDHMRTSLVWISS 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01665 350 MobiDBLite consensus disorder prediction 81 137 - -
Cca02g01665 350 MobiDBLite consensus disorder prediction 114 136 - -
Cca02g01665 350 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 1 214 - -
Cca02g01665 350 MobiDBLite consensus disorder prediction 203 229 - -
Cca02g01665 350 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
Cca02g01665 350 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 214 IPR045174 GO:0003700|GO:0006355
Cca02g01665 350 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Cca02g01665 350 MobiDBLite consensus disorder prediction 89 107 - -
Cca02g01665 350 Pfam Dof domain, zinc finger 38 94 IPR003851 GO:0003677|GO:0006355
Cca02g01665 350 MobiDBLite consensus disorder prediction 149 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01665 Cca-Chr2 35575532 35577123 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01665 1 183 C2C2-Dof Transcription Factor Family AT4G24060 50.704 3.79e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca02g01665 zf-Dof 4.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01665 - - gmx:100782268 290.041