Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01184 ATGTCAGAGGTTAGAGACCCAGCAATAAAGCTGTTTGGAAGGACAATTTCGCTGCCACACAATCAttcttcttctcttcctgcgcctgccacttttccttcttcctcttctCCGCCTGAAGTTTCCTCTGCAACAACACCACACCAACCTCAGGAATCATCAAGGAAAGAACTTACCTCATCACAAGATGATGATAACTCACATCAAACTACAGAGGATGTAAAATCTGCCACCACATCTTCAGGCATGGAGAATCCTAAGACTTCCTCAGCAGAAACCGAGACATCATTGCTGAAATCCCCAACAAATGGAGAACAAAGTGAGTCTAGTGCTTCCGAAGAAAAAACACCAAAGAAACCCGACAAGGTTCTTCCATGCCCGCGATGCAATAGCATGGACACCAAATTCTGTTACTACAACAACTACAATGTCAACCAGCCCCGACATTTTTGCAAGAGCTGTCAAAGATACTGGACTGCAGGAGGGACCATGAGGAATGTGCCGGTAGGAGCTGGTCGCCGAAAAAACAAGAACTCCTCAATGACCACGTCACACTACCGGCACATGATGGTCCCTGAGGCGCTTCAGGGAGCCACACTCAATGCCCCCAATGGATTGCATAATTCTGTTTTGACTTTTGGCCCTGATTCCCCCCTTTGTGATTCAGTGGCTTCTGTGTTGAACATTGCTGAGAGAGCACAAGGTTGTGTTGTCCCAAAAGGGTTTCATCATGCAACTGAGCCAAATAGTTTTGTGACATATAGTAAGGAGGGTGGTAACTCTAATGGAGTTTCTGTTGCAACAACTTCAACTTCAGGCCATAGTGGCTCACATGAAACAGTGGAAAGAAGAGGTGAAGGTTTAACTCCTCAATTGTCATTCTTCCCAAGTTCACCTTGGCCTTATCCATTGAATTCTTCAATGCCTCCTCCTACATTTTGCCCTCCAGGATACCCTTTATCATTCTACACCGCACCAGCATATTGGGGTTGTATGCAACCCTCATGGAACATATCATGTATCTCACCTCAATCTTCTGTTGACAACTCTGTGACTGTGTCTACCCCTACTTTGGGGAAACACACAAGAGATGGGAACATCATTGCCACATCCAATTCACAGAAGATAGACCACAAAAGTTCAGAACACAATGTCTTGGTCCCCAAGACTCTTAGAATTGATGACCCTAGTGAAGCTGCAAGGAGTTCCATGTGGTCTAAACTAGGGAGCAAGAATGATAAGGGAAGTTCTGGAGGCCTCTTCAAACCATTTCCATCAAAGGGAGGTGACATGAATCACATGGTGGAAGCATCACCGGTGTTGCAAGCCAACCCTGCAGCTCTATCGCGGTCTCTCACCTTCCATGAACAGACCTAA 1377 0.4437 MSEVRDPAIKLFGRTISLPHNHSSSLPAPATFPSSSSPPEVSSATTPHQPQESSRKELTSSQDDDNSHQTTEDVKSATTSSGMENPKTSSAETETSLLKSPTNGEQSESSASEEKTPKKPDKVLPCPRCNSMDTKFCYYNNYNVNQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKNSSMTTSHYRHMMVPEALQGATLNAPNGLHNSVLTFGPDSPLCDSVASVLNIAERAQGCVVPKGFHHATEPNSFVTYSKEGGNSNGVSVATTSTSGHSGSHETVERRGEGLTPQLSFFPSSPWPYPLNSSMPPPTFCPPGYPLSFYTAPAYWGCMQPSWNISCISPQSSVDNSVTVSTPTLGKHTRDGNIIATSNSQKIDHKSSEHNVLVPKTLRIDDPSEAARSSMWSKLGSKNDKGSSGGLFKPFPSKGGDMNHMVEASPVLQANPAALSRSLTFHEQT 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01184 458 MobiDBLite consensus disorder prediction 402 428 - -
Cca01g01184 458 MobiDBLite consensus disorder prediction 17 56 - -
Cca01g01184 458 PANTHER CYCLIC DOF FACTOR 2 1 458 IPR045174 GO:0003700|GO:0006355
Cca01g01184 458 ProSitePatterns Zinc finger Dof-type signature. 126 162 IPR003851 GO:0003677|GO:0006355
Cca01g01184 458 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 458 - -
Cca01g01184 458 MobiDBLite consensus disorder prediction 72 110 - -
Cca01g01184 458 MobiDBLite consensus disorder prediction 57 71 - -
Cca01g01184 458 ProSiteProfiles Zinc finger Dof-type profile. 124 178 IPR003851 GO:0003677|GO:0006355
Cca01g01184 458 Pfam Dof domain, zinc finger 121 178 IPR003851 GO:0003677|GO:0006355
Cca01g01184 458 MobiDBLite consensus disorder prediction 17 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01184 Cca-Chr1 18496308 18499858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01184 6 456 C2C2-Dof Transcription Factor Family AT5G39660 39.400 1.89e-85 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca01g01184 zf-Dof 2.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01184 - - gmx:100813315 678.707