Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00815 ATGTTGGGTAAGTGTGAGAAAACGGTAGTCATGAACCCTCCAACAGCGTCTAACAAATGGACACAGGTTCACGCTCAGATAGATGATCACAAAGCCTCTATGGGAAGAGTGATGGAAAAGCCAAGCCAAGATCTTCTTCAGCAGCAACAACAAGCCCTCAAGTGCCCTCGCTGCGACTCTTCAAACACCAAGTTCTGCTACTACAACAACTACAGTTTGTCACAGCCTAGGCACTTCTGCAAAGCCTGCAAGCGATACTGGACAAGAGGTGGAACTCTCAGAAACGTTCCCGTTGGCGGCGGTTGCAGAAAAAACAAGCGTGTCAAGCGTCCAAACGGTGACGCTTCTGCTACTGCTAATTCTCCTCCATCATCTTCCACTCCCAGCGCCAATTCAAACCCTCCTTCCCAGGCCCACATCGATAGTATTGCTTCTAGTTCCACCTCAAACCATATCAATATAAACCCTTTGTTTTATGGGTTAACTAGTAACGGTAACATGAATGTTCCTTTCCCAAGGTTTAATCTTCAGTCTCAGATGAATGCCCTTGGGCTAGGTTTTTCATCTGGGGTTATGTCAAGTGAAGCTAGTGATAACGGTTACCGAAGTGGGTTTAGTACTTCAAATTCAAATAATAACAATAACTCGTTTCTTTCTGCTTATAGTTCCATATTTGGTGGTTCTTCTTCAACTTGTGCACCCTCAACTCCTGTTATGGCTTCCTTGCTGAGCTCAACTCTCCTGCAGGAGAAATTTATGGGTGGTGGGGTGAAGGGTGATCAAGGTGGCAACAGTTTCCAGGGCTTGGCGCAGCTAGAAGGGTTGCAAATGGAAGGGAATAGCTCAAAGGAAGTGGCTGAAGGACAAAACAGTGGAGAGGGAGAAGAGTGTGACCTTCTCGAGCTGGTCCTCGACCAGAGGCAGAGCATGCCCAGGACGATGGATTTTCACAGTGAATCCACCGCTATGAACTTGTACTTCATGGCATGGGGGTTGTTCGTCACGATGAAGTGGAACAAGAGCAGGGAGATGGCGTTAAGATCTTCCACCACTTCACGGAGTCATAGGCCAAGATCATGGCCACGTACAGAGGTACCACGGCGGTCAGCACGTGGTAGAGGCCCAAGGCTGTTATCATTTTCAGAGATTAAGAGCGGTGGCCAGAGAAGAAGAAGCTCAAGGCAGAAAAAAAACAAGCGTGTCAAGCGTCCAAACGGTGACGCTTCTGCTACTGCTAATTCTCCTCCATCATCTTCCACTCCCAGCGCCAATTCAAACCCTCCTTCCCAGGCCCACATCGATAGTATTGCTTCTAGTTCCACCTCAAACCATATCAATATAAACCCTTTGTTTTATGGGTTAACTAGTAACGGTAACATGAATGTTCCTTTCCCAAGGTTTAATCTTCAGTCTCAGATGAATGCCCTTGGGCTAGGTTTTTCATCTGGGGTTATGTCAAGTGAAGCTAGTGATAACGGTTACCGAAGTGGGTTTAGTACTTCAAATTCAAATAATAACAATAACTCGTTTCTTTCTGCTTATAGTTCCATATTTGGTGGTTCTTCTTCAACTTGTGCACCCTCAACTCCTGTTATGGCTTCCTTGCTGAGCTCAACTCTCCTGCAGGAGAAATTTATGGGTGGTGGGGTGAAGGGTGATCAAGGTGGCAACAGTTTCCAGGGCTTGGCGCAGCTAGAAGGGTTGCAAATGGAAGGGAATAGCTCAAAGGAAGTGGCTGAAGGACAAAACAGGACATTGCCCCTTCCGCTCACTTCCTCTGCCCCAGTTGCTACCTCACCGCTCTCAAGCTCGATTGCACTTGCGTCAACGATTCCGCCATCGCCTTCTTGCTCAACAATTCCTGCACCAGTAAGGGATGGCCAATGTCCTGAATATAGCGGGGAGGAGCAAGCTATTTGTGCTGTTGGTCTTGCAAAATCAAAACCTGGTGTTTTTGTTGAAGCTATGCAATATCTTTTAGTTTTAGCGACACCTGTTGAGGAATCAAGTTCGGCATCTTGGAAAATATCTAAGCATAAGTTTCTTCTGGAGTTACTTTAA 2061 0.4658 MLGKCEKTVVMNPPTASNKWTQVHAQIDDHKASMGRVMEKPSQDLLQQQQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPNGDASATANSPPSSSTPSANSNPPSQAHIDSIASSSTSNHININPLFYGLTSNGNMNVPFPRFNLQSQMNALGLGFSSGVMSSEASDNGYRSGFSTSNSNNNNNSFLSAYSSIFGGSSSTCAPSTPVMASLLSSTLLQEKFMGGGVKGDQGGNSFQGLAQLEGLQMEGNSSKEVAEGQNSGEGEECDLLELVLDQRQSMPRTMDFHSESTAMNLYFMAWGLFVTMKWNKSREMALRSSTTSRSHRPRSWPRTEVPRRSARGRGPRLLSFSEIKSGGQRRRSSRQKKNKRVKRPNGDASATANSPPSSSTPSANSNPPSQAHIDSIASSSTSNHININPLFYGLTSNGNMNVPFPRFNLQSQMNALGLGFSSGVMSSEASDNGYRSGFSTSNSNNNNNSFLSAYSSIFGGSSSTCAPSTPVMASLLSSTLLQEKFMGGGVKGDQGGNSFQGLAQLEGLQMEGNSSKEVAEGQNRTLPLPLTSSAPVATSPLSSSIALASTIPPSPSCSTIPAPVRDGQCPEYSGEEQAICAVGLAKSKPGVFVEAMQYLLVLATPVEESSSASWKISKHKFLLELL 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00815 686 ProSiteProfiles Zinc finger Dof-type profile. 53 107 IPR003851 GO:0003677|GO:0006355
Cca01g00815 686 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-LIKE 2 285 - -
Cca01g00815 686 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 2 285 IPR045174 GO:0003700|GO:0006355
Cca01g00815 686 MobiDBLite consensus disorder prediction 347 435 - -
Cca01g00815 686 Pfam Nup133 N terminal like 627 667 IPR014908 -
Cca01g00815 686 ProSitePatterns Zinc finger Dof-type signature. 55 91 IPR003851 GO:0003677|GO:0006355
Cca01g00815 686 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 396 578 IPR045174 GO:0003700|GO:0006355
Cca01g00815 686 MobiDBLite consensus disorder prediction 114 142 - -
Cca01g00815 686 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-LIKE 396 578 - -
Cca01g00815 686 MobiDBLite consensus disorder prediction 97 142 - -
Cca01g00815 686 Pfam Dof domain, zinc finger 51 107 IPR003851 GO:0003677|GO:0006355
Cca01g00815 686 MobiDBLite consensus disorder prediction 357 371 - -
Cca01g00815 686 MobiDBLite consensus disorder prediction 407 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00815 Cca-Chr1 10918386 10934418 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00815 53 289 C2C2-Dof Transcription Factor Family AT1G28310 45.038 7.42e-39 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca01g00815 zf-Dof 4.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00815 - - gmx:778101 362.844