Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00807 ATGGAACAAGAAGGAGAAAGGAGAGAGGAGAATAGacaacaagtccaacgtgcagcacaacaacaacaacaaccaccgcagcagcagcaGAAATGTCCACGCTGTGATTCCATGAACACCAAGTTCTGCTACTTCAACAACTACAGCCTCTCACAACCTCGTCACTTCTGCAAAACATGTAAAAGGTATTGGACACACGGTGGAACCTTCAGGAACATACCCGTAGGTGGTGGTTCCCGCAAGGGGAAACGTGCCAGAACTTCTGCGTTTTCCAACGCACTCTCCCTCACGCAAGCACAGCCAAATTTGCTGAGGCCTTCACCTTCTCCACCCACCATGCTTCATTCAGCTAGCTCCTTTTACCAACTTGCtggtgctggtgttggtgttggtgttggcgttggtgGAAGTGGGTTTTTGTCTTCTCTGGCAACGCTTCACTCTCTCAACTCTTCACGTCCTTTCAATCATCACTATCTCAAAGTTGGGGTTGCTGGGGATGTTGCCGGTTCTTCTTCTAACTCTTCTCTTCTCTCTGGCTTCAACGCTGCTTCCAATTCCCTTCCACCGCGGTTCCACCACATGGGTAGGGTGGAATCTCTCTATCCTACACAACAACGTTTGGTTATTCCATCGAACGTGGGGGCTAGTGCCACTGGCTCTCACACTACTCAACTTCCACAAAGCTTGATCGTGAGTAATAATAATGCTACCAATGCCTCTTTGTGGAGCACTACTACTATCACCGCCAACGGTAATAACTCTGATCAGAACAATGTCAAAGCTGGTGGTTCTTCTTTGATCCCAAATCATTGGCTTCATCTCCCTGGTATATCATAA 840 0.425 MEQEGERREENRQQVQRAAQQQQQPPQQQQKCPRCDSMNTKFCYFNNYSLSQPRHFCKTCKRYWTHGGTFRNIPVGGGSRKGKRARTSAFSNALSLTQAQPNLLRPSPSPPTMLHSASSFYQLAGAGVGVGVGVGGSGFLSSLATLHSLNSSRPFNHHYLKVGVAGDVAGSSSNSSLLSGFNAASNSLPPRFHHMGRVESLYPTQQRLVIPSNVGASATGSHTTQLPQSLIVSNNNATNASLWSTTTITANGNNSDQNNVKAGGSSLIPNHWLHLPGIS 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00807 279 MobiDBLite consensus disorder prediction 15 33 - -
Cca01g00807 279 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 13 277 IPR045174 GO:0003700|GO:0006355
Cca01g00807 279 ProSiteProfiles Zinc finger Dof-type profile. 30 84 IPR003851 GO:0003677|GO:0006355
Cca01g00807 279 Coils Coil 1 21 - -
Cca01g00807 279 ProSitePatterns Zinc finger Dof-type signature. 32 68 IPR003851 GO:0003677|GO:0006355
Cca01g00807 279 PANTHER DOF ZINC FINGER PROTEIN DOF5.4-LIKE ISOFORM X1 13 277 - -
Cca01g00807 279 MobiDBLite consensus disorder prediction 1 33 - -
Cca01g00807 279 Pfam Dof domain, zinc finger 28 84 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00807 Cca-Chr1 10811359 10812283 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00807 25 120 C2C2-Dof Transcription Factor Family AT3G45610 56.250 7.91e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca01g00807 zf-Dof 3.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00807 - - ccaj:109801261 471.47