Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00456 ATGGTTCTCTCCAAAACCGCCTCCGAATCCGACGTCTCTGTCCACTCAACCTTCGCTTCTCGCTATATGCCGGAGGAGTCCATACCGAAGGAGGCAGCGTACCAGATCATAAACGACGAGTTGATGTTGGACGGGAATCCGAGGCTGAACCTGGCGTCGTTTGTGACAACTTGGATGGAACCTGAGTGTGATAAACTCATCATGGCTTCCATTAATAAGAACTATGTTGACATGGACGAGTACCCTGTCACTACCGAGCTACAGAATCGGTGTGTAAATATGATAGCTCATCTTTTCAATGCACCATTAGGAGAGTCTCAGGCTGCAGTTGGTGTTGGCACAGTTGGTTCATCTGAGGCCATAATGTTGGCTGGATTGGCATTCAAAAGGAAGTGGCAGAACAGAAGGAAAGAAGAGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAGGTTTGCTGGGAGAAATTTGCCAGGTACTTTGAGGTGGAGTTAAAGGAAGTTAATTTGCGTGATGGATACTATGTGATGGACCCTGAAAAGGCCGTGGAATTGGTGGATGAGAACACTATTTGTGTTGCTGCTATCCTTGGTTCTACGCTAAATGGAGAGTTTGAAGATGTCAAACGCTTGAATGATCTCCTGGTTGAAAAGAATAAGCAAACTGGATGGAAGACTCCTATTCATGTGGATGCAGCTAGTGGTGGGTTCATTGCACCATTTATTTATCCAGAGCTTGAGTGGGACTTTCGGTTACCGCTGGTGAAGAGCATCAATGTTAGTGGGCACAAGTATGGTCTGGTCTATGCTGGAATCGGTTGGGTTATTTGGAGAAGCAAGGAAGACTTGCCTGAGGAACTTATCTTCCATATCAACTATCTCGGTGCTGATCAACCCACCTTTACCCTTAACTTCTCTAAAGGGTCTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGCTATGAGGGATATAGAAACGTGATGGAAAATTGTAGAGACAACATGATAGTGCTGAAAGAGGGACTCGAGAAAACAGGGCGGTTTGACATTGTGTCGAAAGAGAATGGTGTGCCTTTGGTGGCTTTCACATTGAAAGACCACACCCACTTTGATGAGTTCCAAATCTCTGATCTGCTGAGGCGCTTTGGGTGGATAGTGCCAGCATACACCATGCCCCCAGATGCTCAACATGTCACCGTGCTACGTGTTGTCATCAGGGAGGACTTCTCAAGAACCCTCGCAGAGCGTCTTGTGGCTGATGTGGAGAAGGTGCTGCATGAGCTTGATTCACTTCCAGCAAGGGTGATAAGTAGCACCTCTGTCACAGTCAATACAGAACAAAATGGCAAGGTGGTGGTTGCCAAGAAGAGTGCTCTAGAGACACAGAGGGAAATCACTGCGATTTGGAAGAAGTTAGTGTTGGAGAGGAAGAAGCTGAATGACAAGATGAATGGTGTGTGTTAG 1485 0.4653 MVLSKTASESDVSVHSTFASRYMPEESIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGESQAAVGVGTVGSSEAIMLAGLAFKRKWQNRRKEEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVNLRDGYYVMDPEKAVELVDENTICVAAILGSTLNGEFEDVKRLNDLLVEKNKQTGWKTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYRNVMENCRDNMIVLKEGLEKTGRFDIVSKENGVPLVAFTLKDHTHFDEFQISDLLRRFGWIVPAYTMPPDAQHVTVLRVVIREDFSRTLAERLVADVEKVLHELDSLPARVISSTSVTVNTEQNGKVVVAKKSALETQREITAIWKKLVLERKKLNDKMNGVC 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00456 494 Pfam Pyridoxal-dependent decarboxylase conserved domain 24 372 IPR002129 GO:0016830|GO:0019752|GO:0030170
Cca01g00456 494 SUPERFAMILY PLP-dependent transferases 17 435 IPR015424 -
Cca01g00456 494 Gene3D - 57 351 IPR015421 GO:0003824
Cca01g00456 494 Gene3D - 352 439 - -
Cca01g00456 494 PANTHER GLUTAMATE DECARBOXYLASE 1 494 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cca01g00456 494 Gene3D - 1 56 - -
Cca01g00456 494 CDD DOPA_deC_like 50 430 - -
Cca01g00456 494 PANTHER GLUTAMATE DECARBOXYLASE 1 494 - -
Cca01g00456 494 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 15 435 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00456 Cca-Chr1 5677853 5689151 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00456 1 494 Calmodulin-binding Proteins AT2G02010 83.300 0.0 862
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00456 01 5677853 5689151 Cca01g00456 01 5677853 5689151 ECH