Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00993 ATGTCACCTGATGAAACACAACCCTCAAAGTCTGCAAAAGACAAAGACAACCAAAATGGTTCACTTGGTCGGAAAACTTCATCTTCTTCAACATCTTCATCAACAAGGCCACAAGAACAAAACATGAACTGTCCAAGATGTTACTCACCCAACACAAAATTCTGTTACTACAACAACTATAGCCTAACACAACCAAGATACTTCTGCAAAACATGTAGAAGATATTGGACAAAAGGCGGTGCTTTACGCAACGTTCCGATTGGTGGTGGTTGTAGAAAGAACAAGAAAATGAAATCATCATCATCTTCAAGACTCTCTTGTGATTTAAAAGACTCTGCTTCTTCTTCTTCATTAGAGCTTGGTGGTCTTAATTTCCTTCACACAATTTCTCCTTCTATAGATTTTCATCTTGGTAATAATTTACCTTTTCCTCCAAGGCTTCAACTTCATCAAAATCATCATACTCCAATGTTGTTTAACCAATTTTCATCATCTTATGATGAAACTAATTCCTCTACTCCTTTAACAACTGTTTCATCAACTTTCAACCTTGATTCTACTCAAAATTCTGTTGCTGCTATGAACTACCCTTTCTCAAATTATAATGGTGTAATACAAGGTATGAGTTCAATGAATATTCATACTAATCTTGAATCATTGAGTTCTATGAACCAAGACTTGCACTGGAAGCTACAGCAACAGAGGTTAACTATGATGTTTGGTGCAGAAAACCAGAAAGATAATAATCAGACACAAAAACCACAACCTATTTTGTTTGAGAATGTTGAGGTTTCAAAGGGAAATGGTGGAAATAATTTATGTGTTGGAAATTCAAGAAGAGAAGTTGGTGATACACCAAGTGAGTGGTTTTTTGGTAATTCTTAtaatggttctgttactgttactgctgctgctagacctactgGAAGTAATGGGGGTGCAGGAAGTAATAACTGGAATGGTTGGACTGATGTGCACCAGCAATATAATGCTTTGCCCTAG 1002 0.3473 MSPDETQPSKSAKDKDNQNGSLGRKTSSSSTSSSTRPQEQNMNCPRCYSPNTKFCYYNNYSLTQPRYFCKTCRRYWTKGGALRNVPIGGGCRKNKKMKSSSSSRLSCDLKDSASSSSLELGGLNFLHTISPSIDFHLGNNLPFPPRLQLHQNHHTPMLFNQFSSSYDETNSSTPLTTVSSTFNLDSTQNSVAAMNYPFSNYNGVIQGMSSMNIHTNLESLSSMNQDLHWKLQQQRLTMMFGAENQKDNNQTQKPQPILFENVEVSKGNGGNNLCVGNSRREVGDTPSEWFFGNSYNGSVTVTAAARPTGSNGGAGSNNWNGWTDVHQQYNALP 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00993 333 ProSiteProfiles Zinc finger Dof-type profile. 42 96 IPR003851 GO:0003677|GO:0006355
Car08g00993 333 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 17 333 - -
Car08g00993 333 MobiDBLite consensus disorder prediction 1 42 - -
Car08g00993 333 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 333 IPR045174 GO:0003700|GO:0006355
Car08g00993 333 Pfam Dof domain, zinc finger 40 96 IPR003851 GO:0003677|GO:0006355
Car08g00993 333 MobiDBLite consensus disorder prediction 21 42 - -
Car08g00993 333 ProSitePatterns Zinc finger Dof-type signature. 44 80 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00993 Car-Chr8 9316695 9318321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00993 23 333 C2C2-Dof Transcription Factor Family AT5G65590 40.256 1.15e-58 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Car08g00993 zf-Dof 1.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00993 - - gmx:100777894 334.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00993 08 9316695 9318321 Car07g01887 07 21226304 21227599 PCT