Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00484 ATGGATGCAGGTAAGGAAGCAAGAATGAGTCAATACCGTTTGGCAAACTGGCAGAACAATGAAGACAACAGCCCAAGTCGTGAATCCAGAGCCCTCAGACTCTTGTTGACTACTGCTACTGCTAACGCTGCGCTCAATAACCGAAGCAATGACGGAGGAGGAaccaccaccaccaccaccaccaccaATCAATCACCATTTCCTCCTCCAGCAGACATTATCAGCGCTCTTGTCCCTCCTCCTCATCCTTCCACTTCCAATTCCACCTCACCAAGACTCTTCGGGTCTAGTCTTTTTCATCCTCCTGCTACTTCAGCTACTCCTCCATCACTAATCCCACTTCATCGCGAAGCACGTGCTGCTAGAGTTGCACCAACATCACTCATTGATCCATTTAACTATGGACCACAACCATCTCTGAATATTCCTTCTAGATATAATAACAATCAAAATGGAGGAAGCAGCAGTAGTaacaacaacaacaacaaGAGAACTAGATCACCTGATCATCACCATACAGGTGAGGGTTCTTCTAACACTCAAGGATCACAACATGCTTCTGGAACCACCAGTAGTTCTAGAAGACGCAATCTTTCTGCTTATAATGTTAACACCGCATCAACATGGCACTTTCCTGCTGGTAATGATGGTGCTTCCGTCGCACACGTGGCACGCGTGACGAGTCAAGCTGGACCCAGTAGTAGAAGAACTACCTCTACTGCTGCCGCTGCTGATAACAACAATAACTatcgtcatcatcatcatcatcatcatcgtcaCGATGCACATGTAATTCCAGCTTTTAGTCCAGTAGCTTTTTTTGGAAGTGATTCTGATTCAATTTCTCCTCTGGATATTTCTCGCCATCAGTTTCCTTGGTCTGAGTATCCAAGCCGAAGAAATGACCCTTCATCTTCTTCTCCTTTGTACGCTGCTACAACAGGAGCTGAAGCTTATCTTCGTAGTACCAACCTGCATAGAAACAATAATGATTATGTTTCTTCTACAGTAGCAGGAGGTTCATCTTTCTCATTTTCTTCTCCATTTGGAATGAGAGGTACTAGTACAGGCTGGGGGCAAAGTGGTAATAATAACAACGTAGATTTCTTTGAAGGTGTATTTGATCAACCAGAGAATAATAATGATACTGATTCTGGTGCATATGTTCATAACACCATTAATGTTGAACAATATGTAAGGGTAGCACCAGGAGGACAAGTCACTCTTACATCGTCGCTGCCGGCACCTTCTGATCCTTCTCCGAGTAATCATGTCAGACAAATCCGTCGTCCTAGATTGGGGATGTCTCTAGGTCCTCCTCCCAGCCGGAGCACTTTAGcagcggctgtggcagcgtcagcgtcagcgtcagGGAGTCGAGCTCGTCGTCGCGATAATAATGATCACATTCTCACTTCAACTTCTCCTGAACTAAGGATTGAGAGAAACAGGCTAAGAGATGAGATTTTCAGAGCCCTACAACATCTGCGCAATGGTGGCTCTGTGCGGGTAGAGGACTTGTTGATGCTGGATTACTCAATTGTATTGAATTTGCTTGATTCGCAAGAACGTGTGGATCAGATAAATAATTCAGAGGACTGGCCATATGAGATGGTTTTGGCTCTTGAAGAACAGATGGGCAGGGTGGAGACTGGACTGACGGAGCAAGAAATTATGAATTACATCGAGCAAGAAGTTTTCCACTCCACTGAACTAGGAACCTCTACCCATAATGAAACCTGCACCATATGCCAGGAAGACTATGTCGATGGGGAACGAATTGGAAGGTTGGACTGTCGGCACATATATCACCTAGATTGCATCAAACAGTGGTTGGCAGTGAAGAATGTTTGTCCAATTTGTAAGCAAACAGCTCTTGAAATTGATGAAGATGAGGATGAAAGCGATTGA 1911 0.4202 MDAGKEARMSQYRLANWQNNEDNSPSRESRALRLLLTTATANAALNNRSNDGGGTTTTTTTTNQSPFPPPADIISALVPPPHPSTSNSTSPRLFGSSLFHPPATSATPPSLIPLHREARAARVAPTSLIDPFNYGPQPSLNIPSRYNNNQNGGSSSSNNNNNKRTRSPDHHHTGEGSSNTQGSQHASGTTSSSRRRNLSAYNVNTASTWHFPAGNDGASVAHVARVTSQAGPSSRRTTSTAAAADNNNNYRHHHHHHHRHDAHVIPAFSPVAFFGSDSDSISPLDISRHQFPWSEYPSRRNDPSSSSPLYAATTGAEAYLRSTNLHRNNNDYVSSTVAGGSSFSFSSPFGMRGTSTGWGQSGNNNNVDFFEGVFDQPENNNDTDSGAYVHNTINVEQYVRVAPGGQVTLTSSLPAPSDPSPSNHVRQIRRPRLGMSLGPPPSRSTLAAAVAASASASGSRARRRDNNDHILTSTSPELRIERNRLRDEIFRALQHLRNGGSVRVEDLLMLDYSIVLNLLDSQERVDQINNSEDWPYEMVLALEEQMGRVETGLTEQEIMNYIEQEVFHSTELGTSTHNETCTICQEDYVDGERIGRLDCRHIYHLDCIKQWLAVKNVCPICKQTALEIDEDEDESD 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00484 636 Pfam Ring finger domain 580 622 IPR001841 -
Car08g00484 636 SUPERFAMILY RING/U-box 580 627 - -
Car08g00484 636 MobiDBLite consensus disorder prediction 174 196 - -
Car08g00484 636 MobiDBLite consensus disorder prediction 132 163 - -
Car08g00484 636 MobiDBLite consensus disorder prediction 80 104 - -
Car08g00484 636 MobiDBLite consensus disorder prediction 453 474 - -
Car08g00484 636 MobiDBLite consensus disorder prediction 128 196 - -
Car08g00484 636 CDD RING-H2_TTC3 581 622 - -
Car08g00484 636 MobiDBLite consensus disorder prediction 407 424 - -
Car08g00484 636 MobiDBLite consensus disorder prediction 44 113 - -
Car08g00484 636 ProSiteProfiles Zinc finger RING-type profile. 581 622 IPR001841 -
Car08g00484 636 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 11 627 IPR045191 GO:0061630
Car08g00484 636 MobiDBLite consensus disorder prediction 407 427 - -
Car08g00484 636 SMART ring_2 581 621 IPR001841 -
Car08g00484 636 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 542 626 IPR013083 -
Car08g00484 636 MobiDBLite consensus disorder prediction 44 69 - -
Car08g00484 636 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED 11 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00484 Car-Chr8 4069448 4072684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00484 482 627 C3H Transcription Factor Family AT2G15530 39.333 2.28e-31 128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00484 08 4069448 4072684 Car08g00484 08 4069448 4072684 ECH
Car06g01743 06 17263383 17268059 Car08g00484 08 4069448 4072684 ECH
Car04g03424 04 62944611 62950726 Car08g00484 08 4069448 4072684 ECH