Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02586 ATGAAAACACTAACCATTGATACTGAAGATTCTTTTTCCAGTTTATTGGAATTTGCTTCTAACAATGACATTGAAGGTTTTAAGTTGCTATTAGATAAAGAAGGAGCTTCTTCGATTAATGAGGCGGGTATTTGGTATGGTCGGCAGAATGGGTCTAAGCAGATTGTTCTTGAGCATAGAACTCCTTTGATGGTTGCTGCTACTTATGGAAGTATTGATGTTATGAAGCTTATACTATCGTATCCTGAAGCAGATGTGAATTTTGCTTGTGGGGTGAATAAAAGCACTGCCCTTCACTGTGCTGCTTCTGGTGGGTCAGTTAATGTTGTTGATGTTGTGAGGCTTCTTATATCAGCTGGTGCTGATGTTAATTGTGTCGATGTCAATGGAAATCGTCCTGTTGATGTCATTGTTGTTCCTCCAAAGCTGCAAGGCATGAAAGCAGTTCTTGAGGAACTTCTTTTGGATAATGCCTCTGATAATGGCTCTGTTGGTGACTTCTCTGTACCGGTGTCTGTTAAGTCTTCTAGTTCCGGTTCACTTGAAAATGGGACGGCGTTACCATACTCTCCTTCAGTGTCGCCACCTTCTCCTATGGCGGAATTGAAATTTACTGAGAAAAAAGAGTATCCAGTTGATCCATCACTTCCTGATATAAAAAACAGCATATATGCAAGTGATGAATTTCGGATGTTTTCTTTCAAGGTTCGTCCTTGTTCCCGTGCGTACTCTCATGATTGGACCGAGTGTCCATTTGTTCATCCTGGAGAAAATGCTCGGAGAAGAGACCCTAGGAAGTTCCATTATAGTTGTGTGCCTTGCCCTGAATTTAGGAAAGGGACTTGTAGGCGTGGAGATATGTGTGAGTATGCTCATGGAGTATTCGAGTGCTGGCTTCACCCAGCTCAGTATCGAACTCGCCTCTGTAAAGATGGCATTAGTTGTAATAGAAGGGTGTGTTTTTTTGCTCACATTCCAGAGGAATTGAGGCCATTGTATGCGTCAACTGGATCTGCAGTTCCTTCACCGCGATCATCTGCCACTGCTCTTAATGCGATGGACATGGCTGCTGCAATGAACCTTTTTCCCGGTTCACCTTCGTCAGTCTCTTCCATGTCTCCATCTCATTTTTCCCAGCCGATGTCCCCTTCTGGAAATAGTATCTCATTCTCAAATGCTTCCTGGGCACAGCAAAATGTTCCAGCACTTCATTTACCAGGAAGCAATCTTCAATCTAGTCGATTGAGATCTTCACTTAGTGCTCGTGACATTCCACTTGAAGACTTCAATGTGCTGACTGATTTTGATGGCCAGCAACACCTTTTTAATGACTTGAGCTGTTTGTCACAGCCTGGCCCTGGTTCTTGTCGGTCTAAGACACTAACTCCATCAAATCTTGAAGAGCTGTTTTCTGCTGAAATTTTGTCAACTCCCCGATATTCTGACCAAGCAATGGCTTCTGTTTTTTCCCCTTCACATAAATCAGCTGCTATGAATCAGTTTAAGCAGCTTCAAAGTATGTTATCACCAATAAATACTAATATGTTGTCTCCTAAGAACGTTGACCATCCTCTGTTACAGGCTTCATTTGGTGTCCCTTCTTCAGGTAGGATGTCACCTAGAAGCGTTGAACCAATCTCCCCAATGAGCCCCCGGATGTCTGCATTTGTGCAGCGTGAGAAACAGCAGCAACAGCTGCGGAGTATAAGTTCTAGGGACCTTGGTGCCAACAATCCTACCTCAGTTGTTGGATCCCCTACAAACCCATGGTCTAAGTGGGGATCTCCTAATGGGATGGCTGATTGGTCGGTAAATGGGGACGAACTAAGTCGCCAAATGCGCAGTGCGTCGTCTTTTGAACACACAAACAATGGGGAAGAGCCTGATCTGTCATGGGTCCAAACCCTAGTGAAGGATTCCTCACCTGAGATAATTAAAGAGAAGTTTGCATCTTCTGGACCTATTGCGTCTGCTGATGGATTGAATTCCAATTCACAAATTGAATCTGTTGATCATTCTGTTTTAGGGGCTTGGCTTGAGCAAATGAAACTGGATCAGCTTGTAGTCTAG 2070 0.4367 MKTLTIDTEDSFSSLLEFASNNDIEGFKLLLDKEGASSINEAGIWYGRQNGSKQIVLEHRTPLMVAATYGSIDVMKLILSYPEADVNFACGVNKSTALHCAASGGSVNVVDVVRLLISAGADVNCVDVNGNRPVDVIVVPPKLQGMKAVLEELLLDNASDNGSVGDFSVPVSVKSSSSGSLENGTALPYSPSVSPPSPMAELKFTEKKEYPVDPSLPDIKNSIYASDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPEFRKGTCRRGDMCEYAHGVFECWLHPAQYRTRLCKDGISCNRRVCFFAHIPEELRPLYASTGSAVPSPRSSATALNAMDMAAAMNLFPGSPSSVSSMSPSHFSQPMSPSGNSISFSNASWAQQNVPALHLPGSNLQSSRLRSSLSARDIPLEDFNVLTDFDGQQHLFNDLSCLSQPGPGSCRSKTLTPSNLEELFSAEILSTPRYSDQAMASVFSPSHKSAAMNQFKQLQSMLSPINTNMLSPKNVDHPLLQASFGVPSSGRMSPRSVEPISPMSPRMSAFVQREKQQQQLRSISSRDLGANNPTSVVGSPTNPWSKWGSPNGMADWSVNGDELSRQMRSASSFEHTNNGEEPDLSWVQTLVKDSSPEIIKEKFASSGPIASADGLNSNSQIESVDHSVLGAWLEQMKLDQLVV 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02586 689 SUPERFAMILY Ankyrin repeat 6 144 IPR036770 -
Car07g02586 689 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 273 293 IPR000571 GO:0046872
Car07g02586 689 SMART c3hfinal6 303 326 IPR000571 GO:0046872
Car07g02586 689 SMART c3hfinal6 268 294 IPR000571 GO:0046872
Car07g02586 689 PANTHER UNKEMPT FAMILY MEMBER 1 687 IPR045234 -
Car07g02586 689 PRINTS Ankyrin repeat signature 94 109 IPR002110 GO:0005515
Car07g02586 689 PRINTS Ankyrin repeat signature 112 126 IPR002110 GO:0005515
Car07g02586 689 ProSiteProfiles Ankyrin repeat profile. 93 128 IPR002110 GO:0005515
Car07g02586 689 Pfam Ankyrin repeats (3 copies) 19 127 IPR002110 GO:0005515
Car07g02586 689 Gene3D - 2 172 IPR036770 -
Car07g02586 689 MobiDBLite consensus disorder prediction 561 594 - -
Car07g02586 689 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 1 687 - -
Car07g02586 689 SMART ANK_2a 10 41 IPR002110 GO:0005515
Car07g02586 689 SMART ANK_2a 93 125 IPR002110 GO:0005515
Car07g02586 689 SMART ANK_2a 58 88 IPR002110 GO:0005515
Car07g02586 689 Gene3D - 268 331 - -
Car07g02586 689 ProSiteProfiles Zinc finger C3H1-type profile. 273 295 IPR000571 GO:0046872
Car07g02586 689 ProSiteProfiles Ankyrin repeat region circular profile. 93 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02586 Car-Chr7 49330480 49334218 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car07g02586 Ank_2 4.1e-11 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g02586 07 49330480 49334218 Car05g00515 05 24851035 24856129 PCT