Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02457 ATGATGAGGCGAATGAAAAAGGAGATCGAGGATGGGATGCTCCTCAATGATCATACTGAGCCACAGTTGAATGATGAGGGTTATGAAGGAAGTGTCTGTGGGGTTGTTCTGAAGAAAGGGCCATGGACATCTGCTGAGGATGATATTTTGGTCAATTATGTCAAGAAGAACGGAGAAGGAAACTGGAATGCCGTTCAGAAGCAGACTGGCCTGTTACGTTGCGGAAAAAGTTGTCGACTGCGGTGGGCTAATCACCTTAGGCCAAATTTAAAAAAAGGGGCATTTAATGCAGAAGAGGAGCTGTTGATTGCTGAGCTTCATTCAAAATTGGGAAACAGATGGGCACGCATGGCAGCGCAATTGCCGGGTCGTACAGATAATGAGATAAAGAACTACTGGAATACCCGGGTCAAGAGGTGTCAACGGGCTGGCTTGCCGGTCTATCCTCCCGGAGTGCAGCAAGAGACTCCCCGTGACCAAAGCACTGGTGGAATTAACGGAGACCATAAATTGCATCCCGATTTCTTGCAGAAAAAGAGTTACGATGATATACATGATGCAATATTTGACAGTCTGAAGGATAACCAGGGAATCTTACCTTATGTGCCTGAGCTTTGTGATATTTCTGCTTATGGCAATATGCTAAATGGTTTTGATTCTTATCAGTATTGTAGTTTTCTGCCAGCAACATCCAACCACAAAATTCTTCTAGAGTCAACAATGCCATTTCTTGATTCCAGTGGTAATAACAACAGAAGTGGTTTTTATCCATTTGATCATATTCAGGATAATACTTCTGATAATTTGACACAATCATTTGGCATGCAATCACCCCTTGATCCTGGTCTCTCCTCACACAGCTCGATGTGTTACAGCCATTCACTTAAAAATGGCAATTCCTCCACTTCTAAGCCTTTCGAGGCTGTTAAGCTGGAGCTCCCTTCACTCCAATATTCAGAAATTGACTTAGGTAGCTGGGGTACATCTTCCACACCTCCGTTACTTGAGTCAATTGAAGATTTCATTCAATCTGATACACCGATTAGTACACTGGAGTCAGATTGTTCTTCTCCACAGAATAGTGGCCTGCTGGATGCTTTACTTTATCCGGCGAAGACTCTGGGCAGTTCAAAAAATAATTTTTATGACAAGTGTTCAAATTCATCTATTGCAACTCCTGGTGACAGAGCAGACAGCTCTGCTTTGAATATGTATGAGCCAGAGTGGGAAGAGTATGCTGATCCTGTACCTCCATTTGGTGCATCTTCCATATTGAATGAGTTCCCCGCTGTTAGTGCCAACAGAAATTCACTGGATGAACAGCCACCTGTTCAGAACTTTGATGGCAACATTGTGAAATCAGAATATGCTGACCAGATTTGGACCCCGGACAGTGAAAATCAAATCATGTCTCTGTTGATCAATAGTCGGCCAGATTTCTTGCTTGCATCAGATTGGTATGAGCCAGCTTCTGGGCAACTCACAAATCAATCCATTGCCACTGATGCTACATCACCGTTTCTCGGAGATCATTTAGCCACTGACAATAAACATATGACTGCTGGAACTTCCATATCAAATCACGTATGGGAGTTCGGTTCTTGTGCATGGAACAACATGCCTGCTGTCTGTCATATGTCTGATCTTGGTTAA 1653 0.4332 MMRRMKKEIEDGMLLNDHTEPQLNDEGYEGSVCGVVLKKGPWTSAEDDILVNYVKKNGEGNWNAVQKQTGLLRCGKSCRLRWANHLRPNLKKGAFNAEEELLIAELHSKLGNRWARMAAQLPGRTDNEIKNYWNTRVKRCQRAGLPVYPPGVQQETPRDQSTGGINGDHKLHPDFLQKKSYDDIHDAIFDSLKDNQGILPYVPELCDISAYGNMLNGFDSYQYCSFLPATSNHKILLESTMPFLDSSGNNNRSGFYPFDHIQDNTSDNLTQSFGMQSPLDPGLSSHSSMCYSHSLKNGNSSTSKPFEAVKLELPSLQYSEIDLGSWGTSSTPPLLESIEDFIQSDTPISTLESDCSSPQNSGLLDALLYPAKTLGSSKNNFYDKCSNSSIATPGDRADSSALNMYEPEWEEYADPVPPFGASSILNEFPAVSANRNSLDEQPPVQNFDGNIVKSEYADQIWTPDSENQIMSLLINSRPDFLLASDWYEPASGQLTNQSIATDATSPFLGDHLATDNKHMTAGTSISNHVWEFGSCAWNNMPAVCHMSDLG 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02457 550 Pfam Myb-like DNA-binding domain 42 100 - -
Car07g02457 550 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 2 546 - -
Car07g02457 550 SMART sant 38 88 IPR001005 -
Car07g02457 550 SMART sant 91 139 IPR001005 -
Car07g02457 550 Gene3D - 94 140 - -
Car07g02457 550 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 141 IPR017930 -
Car07g02457 550 ProSiteProfiles Myb-like domain profile. 87 137 IPR001005 -
Car07g02457 550 ProSiteProfiles Myb-like domain profile. 37 86 IPR001005 -
Car07g02457 550 SUPERFAMILY Homeodomain-like 38 133 IPR009057 -
Car07g02457 550 CDD SANT 41 86 IPR001005 -
Car07g02457 550 MobiDBLite consensus disorder prediction 146 165 - -
Car07g02457 550 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 2 546 - -
Car07g02457 550 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 86 IPR017930 -
Car07g02457 550 Gene3D - 38 91 - -
Car07g02457 550 CDD SANT 94 135 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02457 Car-Chr7 45855059 45860268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02457 16 549 MYB Transcription Factor Family AT5G06100 41.261 1.21e-113 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car07g02457 Myb_DNA-bind_6 1e-13 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g00190 05 4611974 4617238 Car07g02457 07 45855059 45860268 PCT