Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02439 ATGTCGACCCCATCAATATCCCTCATTCCCTTTCTCTCCCTATTCTTCCTTTTACCCTTATTTCTCTTAGCTCAATGTCAAAcaccttcaccttcaccttcgcccttaccttcacctcctcctcctacttctacttcTTCATCCAAAGCATGCAAATTAACATTATATCCAAAACTGTGTCGTTCTATACTCTCCTCAATTCGTTCATCTCCCTCCGATCCCTACAACTTAGGCAAATTCTCAATAAAACAAAGCCTCAAACAAGCCAAAAAACTATCCAAAGTATTCAAAGACTTCCTCAAAAATCATCACCATTCATCTTCTCTAAATCACGACGAGATCGCGGCGCTAGAAGATTGTAGTGAGTTAAACCAACTTAATGTAGATTATTTGGAGTTAGTCCGAGATGAGCTTAAATCAGCTGATTCATCATCTTTCAATAACACAAATGAGTTTGTGGAAAAAATTGAAACTTATCTTAGTGCTGTGGCTACTAATCATTATACTTGTTATGATGGATTGGTAGTGACTAAAAGCAACATTGCTAATGTACTTGCTGTACCTTTGAGTAATGTCACGAAACTATATAGTATTTCACTTGGGTTAGCCATGCAGGCCTTGAACAAAAATATTAAGAAACATAAGACTCGTAAACATGGTCTTCCTACTAAGGCTTACAAGGTCAGACAACCACTTGAAAAACTTATTAAGCTTCTTCGCACAAAATACAGTTGCAATAACTCATCGAAGTGTTCTAGAAACGAAAGGATTCTTAAAGAAAGTGAAAACAAAGGAATTCTACTGAAAGAATATGTTATTGTGAGCCTTGATGGAACAGAGAACTTCACTTCTATTGGTGAAGCTATTGACGCTGCACCTGAAAATTTAAAGTCAGCGGATGGATATTTTCTTATATATGCAAAACAAGGATTATATGAAGAATATGTAACCATTCCAAAAAATAAGAAAAATATCTTGCTTATTGGTGATGGTATTAACAAGACTTGCATCACAGGAAATCATAGTGTCATAGATGGTTGGACAACTTTTAATTCTTCAACTTTTGCTGTATCTGGAGAAAGATTTATAGGAGTAGATATAACATTCAGAAACACAGCAGGTCCAGAAAAGCATCAAGCAGTAGCAGTTCGAAACAACGCAGATCTCTCCATATTCTACCGATGCAGTTTCGAAGGATACCAAGACACACTTTATGTTCACTCATTAAGACAATTCTACAGAGAATGTGATATCTACGGCACAGTCGATTTCATCTTCGGTAATGCCGCAGTAGTCCTTCAAACATGCAACATTTTTGCAAGAAAACCAATGCCTAATCAAAAAAATGCGGTAACAGCGCAAGGTAGAACTGATCCGAATCAGAACACAGGAATCTCAATACAGAATTGTAGGATTGATGCTGCATTTGATTTGGCTCAAGATTTGAATTTGACTAAGAATTATTTAGGAAGGCCATGGAAAGTTTATTCAAGGACTGTTTATATGCAATCTTATATTGGTGATTTAATTTATCCTGCTGGATGGTTAGAGTGGAATGGAACAGTTGGGTTAGATACACTTTTTTATGGTGAATTTGATAATTTTGGACCTGGTGCTATTACTAATAATAGGGTACAATGGCATGGTTATAATTTGTTGACTGCTGTTCAAGCTTTGAATTTCACTGTCCTTAATTTTACTTTGGGGGGTACTTGGCTTCCTGATACTGATATACCTTATACTGCAGGTTTACATTAG 1758 0.3487 MSTPSISLIPFLSLFFLLPLFLLAQCQTPSPSPSPLPSPPPPTSTSSSKACKLTLYPKLCRSILSSIRSSPSDPYNLGKFSIKQSLKQAKKLSKVFKDFLKNHHHSSSLNHDEIAALEDCSELNQLNVDYLELVRDELKSADSSSFNNTNEFVEKIETYLSAVATNHYTCYDGLVVTKSNIANVLAVPLSNVTKLYSISLGLAMQALNKNIKKHKTRKHGLPTKAYKVRQPLEKLIKLLRTKYSCNNSSKCSRNERILKESENKGILLKEYVIVSLDGTENFTSIGEAIDAAPENLKSADGYFLIYAKQGLYEEYVTIPKNKKNILLIGDGINKTCITGNHSVIDGWTTFNSSTFAVSGERFIGVDITFRNTAGPEKHQAVAVRNNADLSIFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAVVLQTCNIFARKPMPNQKNAVTAQGRTDPNQNTGISIQNCRIDAAFDLAQDLNLTKNYLGRPWKVYSRTVYMQSYIGDLIYPAGWLEWNGTVGLDTLFYGEFDNFGPGAITNNRVQWHGYNLLTAVQALNFTVLNFTLGGTWLPDTDIPYTAGLH 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02439 585 CDD PMEI-like_3 50 213 - -
Car07g02439 585 Gene3D - 267 584 IPR012334 -
Car07g02439 585 SUPERFAMILY Pectin lyase-like 269 583 IPR011050 -
Car07g02439 585 Gene3D Invertase/pectin methylesterase inhibitor family protein 48 205 IPR035513 -
Car07g02439 585 ProSitePatterns Pectinesterase signature 2. 418 427 IPR033131 -
Car07g02439 585 SMART PMEI_2 42 202 IPR006501 GO:0004857
Car07g02439 585 PANTHER PECTINESTERASE 11 584 - -
Car07g02439 585 Pfam Pectinesterase 272 567 IPR000070 GO:0030599|GO:0042545
Car07g02439 585 Pfam Plant invertase/pectin methylesterase inhibitor 49 201 IPR006501 GO:0004857
Car07g02439 585 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 49 202 IPR035513 -
Car07g02439 585 TIGRFAM PME_inhib: pectinesterase inhibitor domain 18 202 IPR006501 GO:0004857
Car07g02439 585 PANTHER PECTINESTERASE 11 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02439 Car-Chr7 45040867 45046364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02439 11 584 Carbohydrate Esterase AT3G10720 56.908 0.0 683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g00175 05 4111378 4115460 Car07g02439 07 45040867 45046364 PCT